t: Tuesday, February 7, 2023 6:16 PM
To: Slurm User Community List
Subject: Re: [slurm-users] slurm and singularity
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The remaining issue then is how to put them into an allocation that
is actually running a singularity
day, February 8, 2023 10:01 AM
To: Slurm User Community List
Subject: Re: [slurm-users] slurm and singularity
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You may need srun to allocate a pty for the command. The
on behalf of
> Jeffrey T Frey
> Sent: Tuesday, February 7, 2023 6:16 PM
> To: Slurm User Community List
> Subject: Re: [slurm-users] slurm and singularity
>
> You don't often get email from f...@udel.edu. Learn why this is important
>> The remaining issue then is h
February 7, 2023 6:16 PM
To: Slurm User Community List
Subject: Re: [slurm-users] slurm and singularity
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The remaining issue then is how to put them into an al
Hi,
On 08.02.23 05:00, Carl Ponder wrote:
Take a look at this extension to SLURM:
https://github.com/NVIDIA/pyxis
https://slurm.schedmd.com/SLUG19/NVIDIA_Containers.pdf
enroot & pyxis - great recommendation for rootless containerized runtime
environments in HPC.
Free software, no lic
Take a look at this extension to SLURM:
https://github.com/NVIDIA/pyxis
You put the container path on the srun command-line and each rank runs
inside it's own copy of the image.
Subject:[slurm-users]
> The remaining issue then is how to put them into an allocation that is
> actually running a singularity container. I don't get how what I'm doing now
> is resulting in an allocation where I'm in a container on the submit node
> still!
Try prefixing the singularity command with "srun" e.g.
et how what I'm doing now is
resulting in an allocation where I'm in a container on the submit node still!
From: slurm-users on behalf of Brian
Andrus
Sent: Tuesday, February 7, 2023 12:52 PM
To: slurm-users@lists.schedmd.com
Subject: Re: [slurm-use
You should have the job script itself have the singularity/apptainer
command.
I am guessing you don't want your users to have to deal with that part
for their scripts, so I would suggest using a wrapper script.
You could just have them run something like: cluster_run.sh
Then cluster_run.s
I'm trying to setup the capability where a user can execute:
$: sbatch script_to_run.sh
and the end result is that a job is created on a node, and that job will
execute "singularity exec script_to_run.sh"
Also, that they could execute:
$: salloc
and would end up on a node per their paramet
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