At a certain point, you’re talking about workflow orchestration. Snakemake [1]
and its slurm executor plugin [2] may be a starting point, especially since
Snakemake is a local-by-default tool. I wouldn’t try reproducing your entire
“make” workflow in Snakemake. Instead, I’d define the roughly 60
You have two options for managing those dependencies, as I see it)
1. you use SLURM’s native job dependencies, but this requires you to create
a build script for SLURM
2. You use make to submit the jobs, and take advantage of the -j flag to
make it run lots of tasks at once, just use a jo
