Re: [R-pkg-devel] UseR! Session: Making R easier to use (was: Navigating the jungle of R packages)

2017-02-12 Thread Spencer Graves
in inviting anyone to contribute material, quickly and easily deleting obvious vandalism, managing conflicts, and ensuring that the resulting articles are noteworthy and high quality -- and no one person has to be responsible for any specific thing. Spencer Graves On Fri, Feb 10,

Re: [R-pkg-devel] Referring to data in R/sysdata.rda

2017-04-15 Thread Spencer Graves
yIndex) { junk <- yrPkg:::myDF[index] return(junk) } This will turn of similar messages is slightly different contexts. I don't know if it will work here (and I don't have time to try it myself now). Spencer Graves RStudio will warn that myDF is out of scope. My

Re: [R-pkg-devel] CRAN and cmake

2017-05-23 Thread Spencer Graves
ility of users to find what they want. See "https://user2017.brussels/news/2017/navigating-the-r-package-universe";.) Spencer Graves Hth, Dirk __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Package submission - Issue with pandoc in R CMD check

2017-05-27 Thread Spencer Graves
On 2017-05-27 9:25 AM, Uwe Ligges wrote: For geometa: If you resubmit without the access to "img.shields.io", we can publish now. Otherweise, as we have not yet managed to get a univesally working pandoc on the CRAN master, we cannot publish your package yet. Uwe: Might it be appr

Re: [R-pkg-devel] Producing ß in help files.

2018-01-05 Thread Spencer Graves
sing the English latin alphabet.  These include "ß" = "ss", "ä" = "ae", "ö" = "oe" and "ü" = "ue".   Spencer Graves In LaTeX I would use the macro \ss, but Rd files don't accept that. Is there any way that I

Re: [R-pkg-devel] Producing ß in help files.

2018-01-05 Thread Spencer Graves
On 2018-01-05 21:41, Rolf Turner wrote: On 06/01/18 16:19, Spencer Graves wrote: On 2018-01-05 20:52, Rolf Turner wrote: In a help file that I am writing I wish to cite an item by a bloke whose surname is Weiß.    Write it "Weiss".    See "https://en.wikiped

[R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-13 Thread Spencer Graves
t;Run usethis::use_travis()".[1] However, 'help("use_travis", package="usethis")' says it's deprecated, but I don't understand what is recommended as an alternative. What do you suggest? Thanks, Sp

Re: [R-pkg-devel] autotesting on GitHub with Travis or ...?

2021-05-20 Thread Spencer Graves
t add" and "git commit" .github". * And when using "usethis::use_readme_rmd()", I initially missed the need to "knit" the file to produce the README.md. Spencer Graves On 5/13/21 7:04 PM, Ben Bolker wrote:   GitHub Actions   ?usethis::use_

[R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-22 Thread Spencer Graves
d anywhere in your PATH, and texi2dvi cannot proceed without one. The error message under Windows seemed crudely similar but different: * Error: processing vignette 'sos.Rnw' failed with diagnostics: pdflatex is not available

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
://github.com/r-lib/actions, and I did some other searches without figuring out how to fix "`tikz.sty' not found." For more details, see: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer On 5/23/21 4:43 AM, Duncan Murdo

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
  tinytex::parse_install(      text = "! LaTeX Error: File `tikz.sty' not found."   )     shell: Rscript {0} Duncan Murdoch On 23/05/2021 11:28 a.m., Spencer Graves wrote: Hi, Duncan et al.:   Thanks very much to Duncan for his suggestion.  I did

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
rets.GITHUB_TOKEN }}   RGL_USE_NULL: true The last line might be enough for you, but I think the 2nd line _R_CHECK_FORCE_SUGGESTS_: false may be more important:  you use ks, it imports plot3D, plot3D imports misc3d, but it only suggests rgl and tkrplot:  so that would let ks load wit

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-23 Thread Spencer Graves
on_cran". Again, I really appreciate the help. Spencer On 5/23/21 4:44 PM, Duncan Murdoch wrote: I don't see where the connection is, but it's almost certainly coming in through your unconditional use of "fda::CRAN()".  Since "fda" is not

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-24 Thread Spencer Graves
e fda dependency, but make the test conditional, i.e. change  if (fda::CRAN()) to  if (requireNamespace("fda") && fda::CRAN()) I'd do number 1, or just assume everything is being run on CRAN. Duncan Murdoch On 23/05/2021 6:49 p.m., Spencer Graves wrote: Hi, Duncan e

Re: [R-pkg-devel] GitHub Action failed re-building 'sos.Rnw'

2021-05-25 Thread Spencer Graves
I will try to understand it and fix it myself. However, I really don't understand the code, and you certainly did when you wrote it ;-) Thanks, Spencer Graves On 5/24/21 10:35 AM, Duncan Murdoch wrote: On 24/05/2021 10:17 a.m., Spencer Graves wrote: Hi, Duncan:  

Re: [R-pkg-devel] \donttest{} and writing outputs to tempdir()

2021-06-02 Thread Spencer Graves
You surely should be able to have some examples that would run in less than 5 seconds. I almost never use "donttest". Instead I use conditional skips, and those only on examples that I believe are likely to run too long. In those cases, I believe the standard recommendation is:

Re: [R-pkg-devel] Question about preventing CRAN package archival

2021-06-02 Thread Spencer Graves
The CRAN maintainers almost certainly have tried to contact the maintainer. You can ask if he plans to fix the bug. If not, if it's that easy to fix, you could offer to both the maintainers of both matrixcalc and CRAN to take over maintenance. Spencer On 6/2/21 2:41 PM, Roy M

Re: [R-pkg-devel] How to communicate WARNINGS fixed from *last* CRAN version of a package

2021-06-22 Thread Spencer Graves
_check() Hope this helps. Spencer Graves On 6/22/21 6:53 AM, Alberto Garre wrote: Thanks. I just "replied-to-all" again. Gmail then sends the email to cran-submissi...@r-project.org. Is this the correct address? El mar, 22 jun 2021 a las 12:38, Georgi Boshna

[R-pkg-devel] Warning in dir.create(vd2 <- "vign_test") : 'vign_test' already exists

2021-06-29 Thread Spencer Graves
It's available at: https://github.com/sbgraves237/Ecfun This passed all 4 GitHub Actions, so maybe I should not worry about this. Comments? Thanks, Spencer Graves sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bi

Re: [R-pkg-devel] Change package maintainer

2021-07-02 Thread Spencer Graves
I can suggest one example: multcompView: I created it during or before 2006 and passed it during or before 2011 to Luciano Selzer . I do not remember the exact process, and procedures could have changed since then. However, I think I remember communicating with the CRAN maintainers after

Re: [R-pkg-devel] [External] Re: What is a "retired"package?

2021-09-22 Thread Spencer Graves
On 9/22/21 2:38 AM, Martin Maechler wrote: Lenth, Russell V on Tue, 21 Sep 2021 18:43:07 + writes: > As I suspected, and a good point. But please note that the term "retired" causes angst, and it may be good to change that to "superceded" or something else. well, some of us

[R-pkg-devel] doi confusion and Data codoc mismatches

2021-12-25 Thread Spencer Graves
.0}{text to display to click to link to the doi url}. If it were, e.g., \url{https://doi.org/10.18128/D010.V8.0} I would try replacing it with \doi{10.18128/D010.V8.0}. However, if I do that, I don't know what to do with the "text to display to click to link to the doi url".

[R-pkg-devel] doi confusion and Data codoc mismatches-confusing check

2021-12-26 Thread Spencer Graves
UMS USA: Version 8.0 [dataset]. Minneapolis, MN: IPUMS." does nothing, whild clicking on "doi: 10.18128/D010.V8.0" takes me to that URL. This looks like a change to how *.Rd files are rendered that has appeared in the process on GitHub but not in my local computer. ???

Re: [R-pkg-devel] doi confusion and Data codoc mismatches--AND THE VALUE OF GITHUB

2022-01-04 Thread Spencer Graves
ld appear in R 4.2.0 or maybe some 4.1.x release.  Thanks Kurt! Duncan Murdoch Duncan Murdoch On 26/12/2021 5:55 a.m., Duncan Murdoch wrote: On 26/12/2021 12:07 a.m., Spencer Graves wrote: Hello, All:   The latest checks on "https://github.com/sbgraves237/Ecdat/runs/4634725654?ch

Re: [R-pkg-devel] GitHub error

2022-04-20 Thread Spencer Graves
Hi, Andrew: Thanks. I think that was exactly what I needed: I was in particular unsure about "git push --force". Spencer Graves On 4/20/22 8:22 PM, Andrew Simmons wrote: Not really the place for this type of thing, but here's what I'd do: add .DS_Store to your .

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 2:22 PM, Ivan Krylov wrote: On Mon, 13 Jun 2022 13:59:24 -0500 Spencer Graves wrote: I probably should have just used "Suggests" and not bothered this list with this issue. Why not use the \link{foo} form and let the HTML help system resolve the link at run t

[R-pkg-devel] NOTE: Escaped LaTeX specials: \$

2022-06-13 Thread Spencer Graves
replace "\$1,000" with "1,000 US dollars", and "R\&D" could be replaced with "R and D". However, a dataset "Benefits" includes a column that is "a factor with levels (slack\_work,position\_abolished,seasonal\_job\_ended,other)&

Re: [R-pkg-devel] Rd cross-references ... NOTE, Undeclared packages ... in Rd xrefs

2022-06-13 Thread Spencer Graves
On 6/13/22 5:05 PM, Duncan Murdoch wrote: On 13/06/2022 5:11 p.m., Spencer Graves wrote: On 6/13/22 1:26 PM, Duncan Murdoch wrote: On 13/06/2022 12:12 p.m., Spencer Graves wrote: Hello, All:    How do I fix "Rd cross-references ... NOTE Undeclared packages ‘EnvStats’, ‘drc’,

Re: [R-pkg-devel] Warning... unable to translate 'Ekstrm' to a wide string; Error... input string 1 is invalid

2022-07-19 Thread Spencer Graves
Hi, Ivan et al.: On 7/19/22 1:03 PM, Ivan Krylov wrote: On Tue, 19 Jul 2022 12:32:20 -0500 Spencer Graves wrote: Can someone provide me with a link to the correct development version of help('iconv')? The current version includes the exact offending "\x" strings that I

[R-pkg-devel] Thanks -- success after 4 package submissions in 3 days

2022-07-23 Thread Spencer Graves
that are more easily fixed. Spencer Graves On 7/20/22 11:50 AM, Uwe Ligges wrote: Or simply read ?news which explains how the three formats (plain text NEWS, NEWS.Rd and NEWS.md) should look like. Best, Uwe Ligges On 20.07.2022 03:27, Max Turgeon wrote: Hi Spencer, This NOTE

Re: [R-pkg-devel] Misspelled words in descrition and tar.gz inside folder

2022-08-10 Thread Spencer Graves
ot;inst" folder. Below please find notes I've prepared for myself on the various tests I've gotten from their book, etc. The section numbers refer to an earlier version of this book. Ignore or use with caution. Hope this helps. Spencer Graves # File &g

[R-pkg-devel] Problems with news in ‘NEWS’

2022-10-12 Thread Spencer Graves
I haven't fixed NEWS. What do you suggest? Thanks, Spencer Graves Forwarded Message Subject:Ecdat 0.4-2: NOTE Date: Thu, 13 Oct 2022 00:55:10 + From: R-hub builder To: spencer.gra...@effectivedefense.org Ecdat 0.4-2: NOTE

Re: [R-pkg-devel] Problems with news in ‘NEWS’

2022-10-13 Thread Spencer Graves
On 10/13/22 4:34 AM, Ivan Krylov wrote: В Wed, 12 Oct 2022 20:16:20 -0500 Spencer Graves пишет: I copied NEWS to NEWS.md and tried to format it as described in: https://r-pkgs.org/other-markdown.html#news Sadly, I still get the same error. It seems to be ignoring my NEWS.md

Re: [R-pkg-devel] Error uploading file on CRAN

2022-11-27 Thread Spencer Graves
urrent status of one such file, see: https://github.com/sbgraves237/Ecdat/blob/master/Ecdat_release_to_CRAN.R Hope this helps. Spencer Graves I look forward to hearing from you. Thanking you and sincerely Havisha Jahajeeah On Mon, Nov 7, 2022 at 12:30 PM Jahajeeah, Hav

Re: [R-pkg-devel] How to reduce examples in a package that takes more than 5 seconds to run?

2022-12-15 Thread Spencer Graves
https://github.com/sbgraves237/sos/blob/master/man/findFn.Rd Hope this helps. Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel ___

[R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
I would happily rtfm if I only knew which fmtr. Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] Current recommendations re. GitHub Action?

2023-01-02 Thread Spencer Graves
n successfully on Unbuntu as well as Windows and macOS. However, Ubuntu failed with devel and oldrel1, complaining, "there is no package called ‘rcmdcheck’". See: https://github.com/sbgraves237/sos Suggestions? Thanks, Spencer Grav

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
ample workflows in: https://github.com/r-lib/actions/blob/v2-branch/examples/check-standard.yaml I also needed LaTeX support, for which Gábor suggested the following: https://github.com/r-lib/actions/tree/v2/setup-tinytex#ctan-packages Spencer Graves On 1/8/23 9:

Re: [R-pkg-devel] Mysterious "invalid z limit"

2023-01-08 Thread Spencer Graves
buse my of this part of my ignorance. Spencer Best,   Kevin On Sun, Jan 8, 2023, 11:30 AM Spencer Graves <mailto:spencer.gra...@effectivedefense.org>> wrote:           If you use GitHub, I highly recommend using "GitHub Action" as described by W

[R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
NULL) : 1:1: unexpected input That's the same error I've gotten with "R CMD build fda" locally. Suggestions? Thanks, Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
Hi, Ivan and Uwe: Thanks for your suggestions, but I've so far been unable to get them to work. see below. On 1/20/23 9:22 AM, Uwe Ligges wrote: On 20.01.2023 15:53, Ivan Krylov wrote: В Fri, 20 Jan 2023 08:41:25 -0600 Spencer Graves пишет: ** byte-compile and prepare packag

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
tent.com/JamesRamsay5/fda/master/NAMESPACE') 1: export(AmpPhasDecomp, rawToChar(readBin(' https://raw.githubusercontent.com/JamesRamsay5/fda/master/NAMESPACE', what="raw", n=20)) [1] "\357\273\277export(AmpPhasDec" -Bill On Fri, Jan 20, 2023 at 9:16 AM Spencer Graves <

Re: [R-pkg-devel] corrupted NAMESPACE file

2023-01-20 Thread Spencer Graves
On 1/20/23 7:32 PM, Duncan Murdoch wrote: On 20/01/2023 8:16 p.m., Spencer Graves wrote: Hello, All:   My attempts to fix this problem exposed what seems to be a completely unrelated problem:  All five GitHub Actions end now with: Error: package or namespace load failed for ‘fda

Re: [R-pkg-devel] Package submission rejected as it fails checks on Debian

2023-02-20 Thread Spencer Graves
buntu would catch the problem that CRAN is catching on Debian. However, having the package on GitHub also makes it easier for someone else to clone the package and test it it for you ;-) This community of R developers provides very valuable support for problems like this.

Re: [R-pkg-devel] Package submission rejected as it fails checks on Debian

2023-02-21 Thread Spencer Graves
However, if CRAN is rejecting your package on GitHub Action, a question about that to this list might help make it available. If you have special Ubuntu configuration issues that are not provided in the standard GitHub Action configurations, asking here might help you with that.

[R-pkg-devel] help fixing CRAN package sos

2023-05-15 Thread Spencer Graves
ect: Re: CRAN package sos Date: Sun, 14 May 2023 14:46:06 +0100 From: Prof Brian Ripley Reply-To: CRAN To: Spencer Graves CC: c...@r-project.org On 12/05/2023 13:03, Spencer Graves wrote: Hello, All: You have just spammed my personal email address, contrary to the CRAN policy and done so

Re: [R-pkg-devel] help fixing CRAN package sos

2023-05-16 Thread Spencer Graves
On 5/16/23 6:06 AM, Uwe Ligges wrote: On 16.05.2023 01:46, Spencer Graves wrote: Hello, All:    The sos package is failing some CRAN checks, complaining:[1] LaTeX errors: ! Missing $ inserted. $ l.303 {\tt pspline_     checker} in the I can only

Re: [R-pkg-devel] help fixing CRAN package sos

2023-05-22 Thread Spencer Graves
f the vignette available on CRAN.[1] The text of sos.Rnw is available on GitHub.[2] I am not eager to change the code in the package, because it could break something else that's currently working. Suggestions? Thanks, Spencer Graves [1] https://cran.

Re: [R-pkg-devel] help fixing CRAN package sos-now fails on GitHub

2023-05-22 Thread Spencer Graves
Suggestions? Thanks Spencer Graves On 5/16/23 7:41 AM, Uwe Ligges wrote: On 16.05.2023 14:02, Spencer Graves wrote: On 5/16/23 6:06 AM, Uwe Ligges wrote: On 16.05.2023 01:46, Spencer Graves wrote: Hello, All:    The sos package is failing some CRAN checks, co

Re: [R-pkg-devel] help fixing CRAN package sos-now fails on GitHub

2023-05-23 Thread Spencer Graves
to Duncan, Ivan, Vincent and Uwe, who contributed to this thread and the resolution of this problem. Spencer Graves Duncan Murdoch __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

[R-pkg-devel] masked from 'package:utils':,, ?

2023-05-23 Thread Spencer Graves
only a NOTE, so CRAN would probably accept it. However, I felt a need to ask about this before I submitted the package to CRAN without asking this group for suggestions. What do you think? Thanks, Spencer Graves __ R-

[R-pkg-devel] masked from 'package:utils':,, ?-2

2023-05-23 Thread Spencer Graves
only a NOTE, so CRAN would probably accept it. However, I felt a need to ask about this before I submitted the package to CRAN without asking this group for suggestions. What do you think? Thanks, Spencer Graves [1] https://cran.r-project

Re: [R-pkg-devel] Change package name

2023-06-21 Thread Spencer Graves
enhancement. Then I added something like ".onAttach" to "RSiteSearch" and kept it on CRAN for a couple of years after introducing "sos". That allowed people to use the old package for a couple of years without forcing them to switch immediately.

[R-pkg-devel] GitHub Action not triggered by a commit to a fork

2023-07-05 Thread Spencer Graves
Hello: Can someone help me understand why a commit to "https://github.com/sbgraves237/KFAS"; does not trigger the GitHub Actions specified in ".github/workflows/check-standard.yaml"? Thanks, Spencer Graves p.s. This is a branch of helske/KF

Re: [R-pkg-devel] GitHub Action not triggered by a commit to a fork

2023-07-05 Thread Spencer Graves
reen button? Got it. I pushed another change, and that triggered GitHub Action. Thanks again, Spencer Graves Best El mié, 5 jul 2023 a las 23:45, Spencer Graves (<mailto:spencer.gra...@effectivedefense.org>>) escribió: Hello:           Can someone h

[R-pkg-devel] gfortran: command not found

2023-07-05 Thread Spencer Graves
n: No such file or directory make: *** [approx.o] Error 1 ERROR: compilation failed for package ‘KFAS' My web search suggests several different ways to fix this problem, but I don't know which to try. Suggestions? Thanks, Spencer Graves p.s. I have b

Re: [R-pkg-devel] URL syntax causes R CMD build failure - a fix

2023-09-02 Thread Spencer Graves
I've encountered similar issues. However, it has been long enough ago that I don't remember enough details to say more without trying to update my CRAN packages to see what messages I get and maybe researching my notes from previous problems of this nature. Spencer Graves On 9/2/

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-24 Thread Spencer Graves
ot;a while" to run }) Have you tried writing directly to Jennifer Bryan ? She and Hadley might be able to get help from the CRAN maintainers in getting help with this particular problem AND getting more documentation on this in their book ;-) hope this helps. spen

Re: [R-pkg-devel] Package bioOED has been removed from CRAN just for personal reasons

2023-11-02 Thread Spencer Graves
d others. When the tone seemed less supportive or even insulting, I'm very glad the person took the time to comment and didn't decide not to reply for fear of offending me. I'm more productive and a better human for all the help I've gotten from this and other R-related lists

[R-pkg-devel] Vignette error: "there is no package called 'markdown'"

2024-06-28 Thread Spencer Graves
graves237/sos/blob/master/vignettes/sos.Rmd This package has been on CRAN with a vignette since 2009. To isolate a new bug, I tried to translate the vignette from Sweave to RMarkdown. I've cut the vignette to almost nothing and still cannot see what's wrong. Suggestion

Re: [R-pkg-devel] Vignette error: "there is no package called 'markdown'"

2024-06-29 Thread Spencer Graves
ri, 28 Jun 2024 22:55:23 -0500 Spencer Graves пишет: I'm getting, "Error: processing vignette 'sos.Rmd' failed with diagnostics: there is no package called 'markdown'": https://github.com/sbgraves237/sos/actions/runs/9721300082/job/26833793243

Re: [R-pkg-devel] Help needed with CRAN check error under MacOS and old-rel

2024-06-30 Thread Spencer Graves
e and added a small test cases to add to the examples of the problem function. Then I fixed the problem (with help from Ivan Krylov on this list). hope this helps. spencer graves [1] https://github.com/aphalo/ggpp On 6/30/24 04:17, Aphalo, Pedro J wrote: Hello, A few

Re: [R-pkg-devel] library dlstats -> cran_stats()

2018-03-16 Thread Spencer Graves
vices, for example.   That's what it says in the DESCRIPTION file of the "dlstats" package, available at "http://finzi.psych.upenn.edu/R/library/dlstats/DESCRIPTION";.   Spencer Graves -Mark Op vr 16 mrt. 2018 om 12:30 schreef Knut Krueger : Dear all,

Re: [R-pkg-devel] Avoid reprocessing Rmd vignette

2018-03-20 Thread Spencer Graves
On 2018-03-20 06:17, Johannes Ranke wrote: ... The idea exposed by Dirk is the same: requireNamespace will find the package on CRAN and will set eval=TRUE. What you want though is to avoid running a chunk on CRAN, even if the package is available. So you need to set eval=FALSE *unconditionally

Re: [R-pkg-devel] some notes

2018-04-24 Thread Spencer Graves
   I've been told that this is a suboptimal solution and should be avoided.  I agree.   Hope this helps.   Spencer Graves You don't have a lot of control of elapsed time because it will depend on what else is happening on the test machine, but if the other times ar

Re: [R-pkg-devel] some notes

2018-04-24 Thread Spencer Graves
On 2018-04-24 12:01, Duncan Murdoch wrote: On 24/04/2018 12:48 PM, Uwe Ligges wrote: On 24.04.2018 18:45, Spencer Graves wrote: [... deleting irrelevant stuff...]     If it becomes infeasible to find smaller datasets, etc., you can cut out certain tests with a construct like the

Re: [R-pkg-devel] some notes

2018-04-24 Thread Spencer Graves
On 2018-04-24 12:23, Uwe Ligges wrote: > > > On 24.04.2018 19:15, Spencer Graves wrote: >> >> >> On 2018-04-24 12:01, Duncan Murdoch wrote: >>> On 24/04/2018 12:48 PM, Uwe Ligges wrote: >>>> >>>> >>>> On 24

Re: [R-pkg-devel] How to write example results to a tempdir()?

2018-04-26 Thread Spencer Graves
t need to remember to "setwd(savedir)" later in the code, which could be a problem if I have multiple exit points.  I don't know how it would work in a vignette or the examples section of a *.Rd file.  tryCatch(..., finally = setwd(savedir)) condenses this into one line ... an

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-05 Thread Spencer Graves
The fda package disables some tests on CRAN using: if(!fda::CRAN()){     test you don't want run on CRAN }   I've used this in other contexts with tests that are too long to run on CRAN but that I want to run otherwise during "R CMD check".   Spencer Graves

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-05 Thread Spencer Graves
On 2018-09-05 12:52, Gábor Csárdi wrote: On Wed, Sep 5, 2018 at 6:34 PM Spencer Graves wrote: The fda package disables some tests on CRAN using: if(!fda::CRAN()){ test you don't want run on CRAN } Seemingly this just checks for a couple of (5 by default) environment variables

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-07 Thread Spencer Graves
that function "CRAN()"! Since then, I've had other occasions to use it.   Spencer Graves -- Sent from Gmail Mobile [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.c

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-07 Thread Spencer Graves
getting an API key:  That's optional.   Spencer Graves Duncan Murdoch Cheers, Rainer Duncan Murdoch __ R-package-devel@r-project.org <mailto:R-package-devel@r-project.org>mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R-pkg-devel] Submission to CRAN when package needs personal data (API key)

2018-09-08 Thread Spencer Graves
On 2018-09-08 14:02, Joshua Ulrich wrote: Hi Rainer, On Wed, Sep 5, 2018 at 2:28 AM, Rainer Krug wrote: Hi I have a package at GitHub (https://github.com/rkrug/ROriginStamp) which I am pre[paring for CRAN. It creates a trusted timestamp using the API fro OriginStamp (https://originstamp.o

Re: [R-pkg-devel] Package Etiquette

2018-09-09 Thread Spencer Graves
What a mess. I'll let an existing package author worry about maintaining what s/he has already written and maintained.  I can worry about other things.   Hope this helps.   Spencer Graves I sense that by actually asking the question (good move!) you already have an inkling about

[R-pkg-devel] DLL 'Matrix' not found: maybe not installed for this architecture?

2019-02-25 Thread Spencer Graves
? � This is for Ecfun on R-Forge that passed their standard tests plus on R 3.5.2 on macOS Mojave 10.14.3. � Thanks, � Spencer Graves Forwarded Message Subject:winbuilder: Package Ecfun_0.2-0.tar.gz has been checked and built Date: Mon, 25 Feb 2019 04:08:22

[R-pkg-devel] clang: error: unsupported option '-fopenmp'

2019-05-03 Thread Spencer Graves
Hello, All:   I'm getting "clang: error: unsupported option '-fopenmp'" when trying to build "https://github.com/helske/bssm"; under macOS 10.14.14 with R 3.6.0;  see below.   What do you suggest?   Thanks,   Spencer Graves p.s.  I

[R-pkg-devel] URL of a frame (or a vignette)?

2019-09-01 Thread Spencer Graves
re as "bssm.pdf".  However, I want to include it in an RMarkdown vignette I'm writing, and I'd rather not force the reader to be on a computer with the package installed -- and force myself to figure out a way to find it in that case, if that can even be done.

Re: [R-pkg-devel] URL of a frame (or a vignette)?

2019-09-01 Thread Spencer Graves
Hi, Jeff:   That's what I needed.  I clicked on the vignette I wanted and got the following: https://cran.r-project.org/web/packages/bssm/vignettes/bssm.pdf   Thanks,   Spencer Graves On 2019-09-01 09:37, Jeff Newmiller wrote: Wouldn't you just refer to [1] or

Re: [R-pkg-devel] URL of a frame (or a vignette)?

2019-09-01 Thread Spencer Graves
2019 15:57 To: Spencer Graves; Jeff Newmiller; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] URL of a frame (or a vignette)? It may be better to use the canonical url, https://cran.r-project.org/package=bssm, as in: https://cran.r-project.org/package=bssm/bssm.pdf By the way

Re: [R-pkg-devel] URL of a frame (or a vignette)?

2019-09-01 Thread Spencer Graves
ssm.Rmd   This seems less likely to be trapped by CRAN checks unless it actually stops working ;-)   Thanks to all who replied to my question.   Spencer On 2019-09-01 10:49, Duncan Murdoch wrote: On 01/09/2019 11:33 a.m., Spencer Graves wrote:     What's the difference

[R-pkg-devel] unable to run 'make clean' in 'src'

2019-09-17 Thread Spencer Graves
(64-bit)".   This is trying to build a local clone of "https://github.com/sbgraves237/bssm";, which is only slightly different from "helske/bssm".   What do you suggest?   Thanks,   Spencer Graves p.s. "https://stackoverflow.com/questions/2

Re: [R-pkg-devel] unable to run 'make clean' in 'src'

2019-09-18 Thread Spencer Graves
;) library("installr") install.Rtools()   I uninstalled Rtools, then installed them using this, and that problem disappeared.  Now I'm dealing with '"pdflatex" not found". I'll discuss that in a new thread.   Thanks,   Spencer Graves On

[R-pkg-devel] Warning in system2(..., stdout = FALSE, stderr = FALSE) :, '"pdflatex"' not found

2019-09-18 Thread Spencer Graves
()   Below please find the output in a commands window including "sessionInfo()".       Thanks,       Spencer Graves >R CMD build bssm * checking for file 'bssm/DESCRIPTION' ... OK * preparing 'bssm': * checking DESCRIPTION meta-information ... OK * cl

Re: [R-pkg-devel] Warning in system2(..., stdout = FALSE, stderr = FALSE) :, '"pdflatex"' not found

2019-09-19 Thread Spencer Graves
Update:  A web search for 'installing pdflatex for "R CMD" on Windows 10?' suggested I install MiKTeX.  I did that from miktex.org, and it got me past that error.  Spencer On 2019-09-19 01:50, Spencer Graves wrote: Hello, All:   What's the recommended way to

Re: [R-pkg-devel] Warning in system2(..., stdout = FALSE, stderr = FALSE) :, '"pdflatex"' not found

2019-09-19 Thread Spencer Graves
On 2019-09-19 12:19, Tomas Kalibera wrote: On 9/19/19 6:29 AM, Spencer Graves wrote: Update: A web search for 'installing pdflatex for "R CMD" on Windows 10?' suggested I install MiKTeX.  I did that from miktex.org, and it got me past that error.  Spencer Please n

[R-pkg-devel] incomplete final line found on 'growth_model.log'

2019-09-20 Thread Spencer Graves
  "R CMD build bssm" on a Windows 10 machine ends by complaining, "  incomplete final line found on 'growth_model.log'". This problem was not fixed by adding a couple of blank lines to 'growth_model.Rmd'.   Suggestions?   Thanks,  

[R-pkg-devel] How to submit to CRAN from GitHub?

2019-09-22 Thread Spencer Graves
anything I understand how to change. NOTE:  "R CMD build Ecdat --resave-data" followed by "R CMD check Ecdat_0.3.3-tar.gz" completed with no errors, warnings or notes under macOS 10.14.6 and Windows 7 and 10.   Thanks,   Spencer Graves Forwarded Mess

[R-pkg-devel] devtools::build_win()?

2019-10-31 Thread Spencer Graves
f "devtools::revdep_check()" seems only to identify the reverse dependencies without testing them.   That do you suggest?   Thanks,   Spencer Graves __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

Re: [R-pkg-devel] compression of vignettes

2019-11-24 Thread Spencer Graves
ar.gz" included the following: * checking installed package size ... NOTE   installed size is  7.2Mb   sub-directories of 1Mb or more:     doc   6.6Mb   Suggestions?   Thanks,   Spencer Graves On 2019-11-21 11:43, Dirk Eddelbuettel wrote: On 21 November 2019 at 16:43,

[R-pkg-devel] default col.names from data.frame not the same as as.data.frame

2019-12-10 Thread Spencer Graves
t; but "as.data.frame(matrix(1:2, 1))" defaults to "V1", "V2".         * I want to use a toy example like this in the documentation for "BMA:::bic.glm.matrix" and "BMA:::bic.glm.data.frame", and since "base" R is inco

[R-pkg-devel] How to create a new project on GitHub?

2020-01-15 Thread Spencer Graves
nd. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists.   *** What do I need to do to fix the mess I seem to have created and get what I want?   *** Thanks, Spencer Graves p.s.  If you know the fda package,

Re: [R-pkg-devel] How to create a new project on GitHub?

2020-01-15 Thread Spencer Graves
ot; Gabor   Thanks.  I now have "https://github.com/sbgraves237/fda";. Then I did "git push --set-upstream origin master", and it seemed to work.   Thanks again.   Spencer On Wed, Jan 15, 2020 at 11:15 PM Spencer Graves wrote: Hello, All: How can I

[R-pkg-devel] CRAN rules re. web scraping?

2020-01-22 Thread Spencer Graves
lected tests not to run on CRAN, e.g., with (!fda::CRAN()).   However, I suspect I should be able to do better than that.   Suggestions?   Thanks,   Spencer Graves p.s.  The development version of this package is available at "https://github.com/sbgrav

Re: [R-pkg-devel] CRAN rules re. web scraping?

2020-01-23 Thread Spencer Graves
https://github.com/sbgraves237/Ecfun".  The package still needs more work, but I will make Prof. Ripley's Feb. 4 deadline.   Thanks again,   Spencer Graves On 2020-01-23 01:55, Iñaki Ucar wrote: On Thu, 23 Jan 2020 at 02:49, Spencer Graves wrote: Hello, All: GOOD NE

[R-pkg-devel] "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC

2020-02-02 Thread Spencer Graves
ent version of Ecfun, which I want to submit to CRAN as soon as I can do so without offending the sensibilities of the overworked CRAN maintainers.   Suggestions?   Thanks,   Spencer Graves Forwarded Message Subject:Ecfun 0.2-2: ERROR Date: Sun, 02 Feb

Re: [R-pkg-devel] "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC

2020-02-02 Thread Spencer Graves
Hi, Dirk:   The short answer is that's part of what's on "rhub".   When I run devtools::check_rhub, I get emails with test results from three platforms:  (1) Windows Server 2008 R2 SP1, R-devel, 32/64 bit.  (2) Ubuntu Linux 16.04 LTS, R-release, GCC. And (3) Fedora Linux, R-devel, c

[R-pkg-devel] finding "logo.jpg" [was: "try" malfunctions on Ubuntu Linux 16.04 LTS, R-release, GCC]

2020-02-03 Thread Spencer Graves
ich of these is the case.   I should proceed to submit the current Ecfun package to CRAN. Then I might modify this test sequence to force an error, so I can see more what is happening.   Suggestions?   Thanks,   Spencer On 2020-02-03 03:06, Iñaki Ucar wrote: On Mon, 3 Feb 2020 at

[R-pkg-devel] revdepcheck::revdep_check interpretation problem

2020-02-10 Thread Spencer Graves
am/magclass    Tools for managing classroom organizations 2: tscheypidi/magclass  Tools for managing classroom organizations 3: rundel/ghclass   Tools for managing classroom organizations   ** None of that sounds like "gamclass".   What do you suggest?   I should probably ign

[R-pkg-devel] Error: Symbol \textasciigrave not provided by (textcomp)

2020-02-16 Thread Spencer Graves
nStandardNames.Rd".  Those functions were written to fix parsing errors with names like "Raúl" that had been mangled by different software before I could get it into R.   After a day's work failed to produce a work around, I decided to ask this group.   What do

[R-pkg-devel] MiKTex v. TeX Live?

2020-02-24 Thread Spencer Graves
anti-virus would not by default identify as part of the operating system.   Suggestions?   Thanks,   Spencer Graves p.s.  This is using R 2.6.2 immediately after running "update.packages()". __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel

  1   2   >