l in
the command, or should I define a .Rprofile in the current diractory?
What is the best approach in such a situation?
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbo
Uwe Ligges writes:
> On 26.08.2015 12:23, Rainer M Krug wrote:
>> Hi
>>
>> I am working on two packages, where one (EnergyBalance) contains
>> general functions and the second package (EnergyBalancePaper) contains
>> the data and the analysis of this
ebrew?
The path looks very much like homebrew. If yes, try installing readline
From homebrew.
Cheers,
Rainer
>
> Duncan Murdoch
>
> __________
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
--
Rainer M. Krug, PhD (Conservation E
; library(extremeStat)
> instgithub("talgalili/installr")
> instgithub("hadley/readxl")
> }
>
>
>
>
> [[alternative HTML version deleted]]
>
> __
>
mulation executed by the sim() function, which attaches the equations
environment at the beginning and detaches it at the end.
This enables me to have different simulation objects with different
functions.
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology
Rainer M Krug writes:
> Hi
>
> I have a package named asm which contains many non-exported functions
> which are all starting with "for.eq.".
>
> I also have an S4 class ASM which, when a new object asm of class ASM is
> created by using the function newASM(
omebody give any guidance, how to fix this? Which one is the “check
directory"?
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Department of Evolutionary Biology and Environmental S
> On 2 Sep 2021, at 14:02, Duncan Murdoch wrote:
>
> On 02/09/2021 6:29 a.m., Rainer M Krug wrote:
>> Hi
>> I submitted an update of the dmdScheme package and got the response back
>> from the pre-submission check that it failed on one platform with the Note:
>
t I assume that is not relevant.
—
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Department of Evolutionary Biology and Environmental Studies
University of Zürich
Office Y34-J-74
Winterthurerstrasse 190
8
Thanks Uwe,
I’ll try submission to CRAN beginning of next week.
Rainer
On 15 Jan 2022 at 00:40:00, Uwe Ligges
wrote:
>
>
> On 14.01.2022 15:14, Rainer M Krug wrote:
>
> Hi
>
>
> I want to re-submit an archived package to CRAN, and I get, when checking
>
> on h
re:
>
> • Is there a way to display any of the vector formats in a graphics
> device in R?
> • Can I pipe stdout (the result from the call to plantuml) directly
> into the device (or through any function) without having to create an
> intermediate file?
>
> #
>>• it is a raster format and I would prefer a vector format.
>>
>> My question is therefore:
>>
>>• Is there a way to display any of the vector formats in a graphics device
>> in R? • Can I pipe stdout (the result from the call to plantuml) d
gt; University of Malta
>>>
>>> (starting from 3rd September 2018)
>>> Lecturer in Spatial Forensics
>>> Department of Criminology
>>> Faculty for Social Wellbeing
>>> University of Malta
>>> https://www.researchgate.net/profile/Gianmarco_Alb
Gianmarco_Alberti4
>> http://cainarchaeology.weebly.com/
>> **
>> [[alternative HTML version deleted]]
>> __
>> R-package-devel@r-project.org mailing list
>> https://stat.ethz.c
question:
>> Is there a way of storing the API key encrypted, so that only the CRAN test
>> servers can decrypt it, or is there another way can steal with this?
>> Thanks,
>> Rainer
>> --
>> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
gges
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On 05.09.2018 09:28, Rainer Krug wrote:
>>>>>>>> Hi
>>>>>>>> I have a package at GitHub (https://github.com/rkrug/ROriginStamp)
&g
ylmer Fisher
> The plural of anecdote is not data. ~ Roger Brinner
> The combination of some data and an aching desire for an answer does not
> ensure that a reasonable answer can be extracted from a given body of data. ~
> John Tukey
> //////
> been a build in the past 24 hours. That solves the problem adequately
> for my purposes without adding any burden to CRAN. Hopefully it works
> for your purposes too.
I haven’t thought about the CRON job for TravisCI - good point. I will activate
it straight away.
Thanks,
Rainer
>
> [...]
>
>
>
> ## Ralf Herold
> ## mailto: ralf.her...@mailbox.org [S/MIME]
> ## https://paediatricdata.eu/
>
> __
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
nk perhaps "stealth fixed" may be more appropro since it's not
>>> in SVN logs, Bugzilla nor noted prominently in any of the various NEWS*
>>> files.
>>>>>>>
>>>>>>> Then there's the "why was the core R inst
k.R#L457
>
> G.
>
> On Tue, Mar 19, 2019 at 11:11 AM Rainer M Krug wrote:
>>
>> Can anyone confirm if this has been fixed? I would like to remove the
>> _R_CHECK_SYSTEM_CLOCK_=0 but would like to know in advance.
>>
>> Thanks
>>
>> Rainer
GitHub and a drat repo), and I would
like to look at the package dependencies BEFORE submitting to CRAN.
Is there a tool which allows me to plot a dependency graph for my local package?
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl
ot;"
> #> 5 r-lib/crancache Imports crancache >=0.0.0.9001
> #> 6 crayon Imports crayon """"
> #> 7 DBI Imports DBI """"
> #> 8 descImports desc >=1.1.1.900
Thanks.
This sounds like a really useful package - I’ll check it out.
> On 9 May 2019, at 12:15, Maëlle SALMON wrote:
>
> Could https://github.com/jimhester/itdepends help?
>
> Maëlle.
> Den torsdag 9 maj 2019 12:10:14 CEST, Rainer M Krug skrev:
>
>
> Thanks Ga
tp_error(resp)) :
Not Found (HTTP 404).
Could not load or update metadata cache. If you think your local cache is
broken, try deleting it with `meta_cache_cleanup()`, or the
`$cleanup()` method.
d>
I get an error. Suggestions?
Rainer
> On 9 May 2019, at 12:20, Rainer M Krug
ee above).
Rainer
```
> On 9 May 2019, at 13:16, Gábor Csárdi wrote:
>
> It fails to download package metadata. Maybe your internet access is
> restricted?
>
> Gabor
>
> On Thu, May 9, 2019 at 12:12 PM Rainer M Krug wrote:
>>
>> But I don’t get it to run.
>
cate things.
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Department of Evolutionary Biology and Environmental Studies
University of Zürich
Office Y34-J-74
Winterthurerstrasse 190
807
ames(dmdScheme)
[1] "Experiment" "Genus""Treatments" "Measurement"
[5] "DataExtraction" "DataFileMetaData"
> names(dmdScheme::dmdScheme)
NULL
>
```
Is there a way, that I can change the value of dmdScheme:
ory. But for CRAN I believe you will need to obtain some kind
> of user confirmation at least once to allow this behaviour. Best, Greg.
>
> Sent from my iPhone
>
>> On 6 Dec 2019, at 08:43, Rainer M Krug wrote:
>>
>> Hi
>>
>> I am writing a
ple who know the details
> much better than I do).
>
> I seem to recall that people have come up with ways to set up an environment
> which can contain mutable objects of this sort.
>
> -pd
>
>> On 6 Dec 2019, at 10:05 , Rainer M Krug wrote:
>>
>> Hi
>&
field.
Is there a recommended way, of adding the DOI of a package to the DESCRIPTION
file? I did not find anything when googling.
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Thanks Uwe, I will do so.
Rainer
> On 16 Dec 2019, at 15:56, Uwe Ligges wrote:
>
>
>
> On 16.12.2019 15:34, Rainer M Krug wrote:
>> Hi
>> UI am preparing my package for CRAN. I have a DOI for my package, and would
>> like to add Ito the DESCRIPTION fi
e than
> asking him to perform a post-mortem examination: he may be able to say what
> the experiment died of. - Ronald Fisher
>
> On Mon, Dec 16, 2019 at 9:43 AM Rainer M Krug <mailto:rai...@krugs.de>> wrote:
> Hi
>
> UI am preparing my package for CRAN. I have
I'm
>> concerned with workspace-type saves since I feel like that often results in
>> a ton of variables being saved.
>>
>> Thanks!
>>
>> --j
>>
>>[[alternative HTML version deleted]]
>>
>> ___
__
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Department of Evolutionary Biology and Environme
8bf86f141af91ab2d7cd011db47%7C1%7C0%7C637169502304943506&sdata=DPyD6zGGcxq41irkaMfMLyjnmqSB96PiIxIh9N2p%2Ft4%3D&reserved=0
>>
>> __
>> R-package-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-pac
> On 11 Feb 2020, at 09:42, Gábor Csárdi wrote:
>
> On Tue, Feb 11, 2020 at 8:38 AM Rainer M Krug <mailto:rai...@krugs.de>> wrote:
>>
>>
>>
>> On 10 Feb 2020, at 17:58, Gábor Csárdi wrote:
>>
>> Maybe you have large, ignored files
> On 11 Feb 2020, at 09:54, Gábor Csárdi wrote:
>
> On Tue, Feb 11, 2020 at 8:52 AM Rainer M Krug wrote:
>> On 11 Feb 2020, at 09:42, Gábor Csárdi wrote:
>> On Tue, Feb 11, 2020 at 8:38 AM Rainer M Krug wrote:
>> On 10 Feb 2020, at 17:58, Gábor Csárdi wrote:
probably because R CMD build does something like cp * to
> copy everything to a temp folder first up, before processing it. An argument
> could be made that it should manually loop through all files and dirs,
> checking each against .Rbuildignore before copying.
>
>
> From: Rain
ng like file.copy( setdiff(list.files(recursive=TRUE)),
>> scan(".Rbuildignore", what=character())), to = destdir) ?
>>
>> On 2020-02-11 8:50 a.m., Rainer Krug wrote:
>>> Thinking about it - what would be the easiest way, to copy the package,
>>> excluding
... OK
* DONE
Any suggestions how I can track down the where these are coming from? Each time
my package has to go through a manual check at CRAN…
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490
OK.
Thanks,
Rainer
>
> Best,
> Kevin
>
> On Thu, Mar 19, 2020 at 9:21 AM Rainer M Krug wrote:
>>
>> Hi
>>
>> My package dmdScheme gets always one note after submission to CRAN:
>>
>>
>> ...
>> * check
gt;
>>
>>
>> ____
>> From: R-package-devel
>> <mailto:r-package-devel-boun...@r-project.org> on behalf of Rainer M Krug
>> <mailto:rai...@krugs.de>
>> Sent: March 19, 2020 11:21:08 AM
>&
is doing stuff.
Any suggestions on how I could make this “CRAN conform”?
Thanks a lot,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Department of Evolutionary Biology and Environmental Studies
Unive
the jar file into that directory or, when no permission is granted,
into the tmpdir()
Thanks, no major changes necessary for that,
Rainer
>
> Duncan Murdoch
>
> On 23/06/2020 8:18 a.m., Rainer M Krug wrote:
>> Hi
>> I have a package called `plantuml` (https://github.
config/user dir. This is
> available via R_user_dir() in R 4.0 (and earlier versions via the backports
> package). An older alternative that still works is to use the rappdirs
> package.
>
>
> -Original Message-
> From: R-package-devel On Behalf Of
> Rainer
Perfect. You also mention the “backports” package - how can I use that one to
be able to also support old versions of R?
Thanks,
Rainer
> On 23 Jun 2020, at 16:34, Hong Ooi wrote:
>
> Yes, that’s the one.
>
> From: Rainer M Krug
> Sent: Tuesday, 23 June 2020 11:12
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Orcid ID: -0002-7490-0066
Department of Evolutionary Biology
with "rappdirs::user_data_dir()".
>
> Do you know how to check if java is installed on their machine?
>
> I thought about using something like that:
>
> jv <- system2("java", args = c("-version"))
> if(jv != 0){
> stop("You hav
rs package, the hoardr
> package) cf
> https://blog.r-hub.io/2020/03/12/user-preferences/#not-so-temporary-files3
>
> Maëlle.
>
> Den tisdag 23 juni 2020 14:56:30 CEST, Rainer M Krug skrev:
>
>
>
>
>
> Thanks Duncan.
>
>> On 23 Jun 2020, at 14:35, Du
Astrance
> (Paris)
> Phone number : +33.6.30.97.34.27
> Research topics: population genetics, landscape ecology, graph theory,
> spatial statistics
>
> - Mail original -
> De: "Rainer M Krug"
> À: "Maëlle SALMON"
> Cc: "r-package-devel&qu
on remote machines.
My question is:
1) I have disabled all tests and all examples if there is no environmental
variable set with the API Key - is this OK for CRAN?
2) If not, how can I make this CRAN compliant?
Thanks,
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc
blob/master/tests/test_getSymbols.R#L4
>>
>> Best,
>> Josh
>>
>> On Fri, Sep 4, 2020 at 3:25 AM Rainer M Krug wrote:
>>>
>>> I know this has been asked a few times - but I can’t find anything which
>>> might help me.
>>>
>>
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