With the new NAMESPACE requirements of importing everything in the bundled
packages I would like to recommend using
writeNamespaceImports
from codetoolsBioC. This analyzes your code and produces a NAMESPACE file
with all imports. Of course, you might benefit from checking it manually.
This pac
Perhaps related: in the Bioconductor minfi package I do some checking on
somewhat large matrices (450,000 times n). To save space, I compute a hash
of the correct result using the digest package. As you, I ran into obvious
issues with precision across platforms. To solve this, I take the matrix
Creating functions that looks like they have the same name, but have
different internals is exactly (one of) the purposes of having methods.
Best,
Kasper
On Thu, Mar 10, 2016 at 4:04 PM, Glenn Schultz wrote:
> Hello Joris,
>
> Thank worked perfectly. My main concern was that I was creating mul
This syntax
Omega(x = 1)
seems weird. How do you know that this call should refer back to the Model
object and not some other hypothetical Model2 object? The code you're
defining should make something like this work
Omega(Model)(x=1)
where you can see the direct dependence on the Model object
Very similar here. I use the RUnit framework, which has testing scripts in
inst/unitTests
I put scripts for creating the test data in
inst/testData
and save rda files into
inst/unitTests
I create the data set by R CMD BATCH and I save the .Rout file which
creates the test data, so I have a
Well, I think it would be a headache, and suboptimal, to require vignettes
to be renderable as text. There are several issues including that not all
vignettes have an included "source" file; there are packages with important
vignettes which are only available as PDFs (or HTML). Also math and plot
Remember there are no rules for a configure script, there is only the
tradition that it is a script you invoke prior to make. "Hand-written"
configure scripts can do anything they want. In this case, I had a 2s look
at the configure script in the ngs project which ultimately are a series of
"konf
For a package, you should not mess with the optimization flag unless you
are disabling high optimization because it produces wrong code. If people
want to use higher optimization flags, they'll compile with higher flags.
On Tue, Jan 10, 2017 at 3:39 PM, Costas Tsirogiannis
wrote:
> Thanks a lot
On Mon, Jan 30, 2017 at 12:04 PM, Cathy Lee Gierke wrote:
> That is the obvious solution, but it doesn't seem correct: I have pdf
> included in the description, and namespace files, yet it is being called
> out. Additionally, aren't most of these pkgs in the packages included by
> default?
>
N
If you installed MacTex basic, you should have the command line utility
tlmgr
available. On my system it is in
/Library/TeX/texbin/tlmgr
and you may need to add this to your path. Using this, it is simple to
install additional packages, by
tlmgr install inconsolata
You probably need to add a
Thanks. It would be great to have this working in 3.4. In Bioc there are
multiple packages with CITATION files with multiple entries, one such
example is minfi
bioconductor.org/packages/minfi
On my wishlist is that it would be great to have support for printing the
header field which many peop
eileis
wrote:
> On Mon, 27 Mar 2017, Kasper Daniel Hansen wrote:
>
> Thanks. It would be great to have this working in 3.4. In Bioc there are
>> multiple packages with CITATION files with multiple entries, one such
>> example is minfi
>> bioconductor.org/packages/minfi
1. The version number complaint is the use of 0.1.2-9033. It is complaining
about 9033. Personally, I would not use the - style, but that is a
personal choice I guess. R-exts says
"The mandatory ‘Version’ field gives the version of the package. This is
a sequence of at least *two* (and usuall
There are 3 solutions. (1) You (get permission) to change the library to
GPL. (2) You get permission to change the license of the R code to
whatever license the library is released under. (3) you split the package.
You have investigated (1) and it does not work. I would suggest thinking
about
John,
Your post does not have many details but why do you think that
instantiating 4 instances of the Mersenne Twister will keep the streams
independent? It is possible to get independent streams, but it will need
more work.
Best,
Kasper
On Fri, Sep 27, 2024 at 11:17 AM Dirk Eddelbuettel wrote:
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