[R-pkg-devel] EHRtemporalVariability package check warning, cannot fix

2020-10-05 Thread Carlos Sáez
Hi, Some weeks ago we received the CRAN notification to update our EHRtemporalVariability package in light of some Warnings found on the vignette compilation. We managed to solve most by including the �webshot� package in the Suggests list in DESCRIPTION, since the Vignette is rendered in .

[R-pkg-devel] is R CMD build --compact-vignettes working as expected?

2020-10-05 Thread Ben Bolker
Am I confused, or doing something wrong, or ... ? I have qpdf installed, and am running R CMD build with --compact-vignettes, but the PDF in the tarball doesn't seem to be compressed despite the fact that the output messages say "compacting vignettes ..." $ R CMD build --compact-vigne

Re: [R-pkg-devel] EHRtemporalVariability package check warning, cannot fix

2020-10-05 Thread Ayala Hernandez, Rafael
Hi Carlos, Your package seems to use BiocStyle to output the vignette. I have encountered a similar error with my NutrienTrackeR package. The issue was triggered by the latest update to the knitr package, which caused knitting of vignettes in BiocStyle output to fail. The issue was resolved by