Bioconductor has a release and a devel branch, with the idea that new
features are introduced into 'devel'. The transition to use BiocManager
is a new feature introduced into devel, and BiocInstaller has a
deprecation message added in devel only. It follows that win-builder is
using bioc-devel
It looks like affy is the culprit.
> requiredByCAMERA <- tools::package_dependencies("CAMERA",
recursive=TRUE)$CAMERA
> directlyRequired <- tools::package_dependencies(requiredByCAMERA)
> names(directlyRequired)[ vapply(directlyRequired,
function(x)"BiocInstaller"%in%x, FUN.VALUE=NA) ]
[1] "affy"
(sorry about the replay, my mistake)
ok, then I guess that is the problem...I do not depend on BiocInstaller so it
must be one of my dependencies.
Thank you very much!
Maribel
> (don't forget to 'reply all', so that others may benefit / contribute to
> the conversation).
>
> You or one of
(don't forget to 'reply all', so that others may benefit / contribute to
the conversation).
You or one of the packages your package depends on must Depend: or
Import: BiocInstaller. If it is your package, then you should no longer
do so. If it is one of the packages your package depends on, th
BiocInstaller has been replaced by the CRAN package BiocManager; the
appropriate way to install Bioconductor packages is
BiocManager::install(). See the vignette at
https://cran.r-project.org/web/packages/BiocManager/vignettes/BiocManager.html
Martin
On 10/5/18 5:36 AM, maia...@alumni.uv.es
I do not know how to solve this warning. I guess it comes from the package
dependency on CAMERA (bioconductor) but I can´t solve it.
https://win-builder.r-project.org/incoming_pretest/LipidMS_1.0.0_20181005_103151/Windows/00check.log>
__
R-package-deve
