Re: [R-pkg-devel] Recommended procedure for solving "Additional issues"?

2018-06-18 Thread Uwe Ligges
On 18.06.2018 16:38, Marius Hofert wrote: On Sun, Jun 17, 2018 at 2:13 AM Uwe Ligges wrote: On 16.06.2018 21:46, Marius Hofert wrote: Dear DevelopeRs, Is there a recommended procedure for addressing "Additional issues" if they appear on CRAN checks? Say you have some C code in a packag

[R-pkg-devel] How to check memory access (understanding Section 4.3 WRE)

2018-06-18 Thread Marius Hofert
Hi, I tried to understand how to check memory access of an R package with C code; see https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Checking-memory-access I'm about 90% sure I understood WRE Section 4.3.2 about valgrind. In essence: 1) When configuring R before make, use the confi

Re: [R-pkg-devel] Recommended procedure for solving "Additional issues"?

2018-06-18 Thread Marius Hofert
On Sun, Jun 17, 2018 at 2:13 AM Uwe Ligges wrote: > > > > On 16.06.2018 21:46, Marius Hofert wrote: > > Dear DevelopeRs, > > > > Is there a recommended procedure for addressing "Additional issues" if > > they appear on CRAN checks? > > > > Say you have some C code in a package which checks fine (S

Re: [R-pkg-devel] spp package error "Package required b ut not available: ‘Rsamtools’"

2018-06-18 Thread Carmen Livi
Dear Simon Urbanek, Since a few weeks I am getting a CRAN-check error under OSX for the package "spp" (https://cran.r-project.org/web/checks/check_results_spp.html): "Package required but not available: ‘Rsamtools’ Rsamtools is available on Bioconductor and the error shows up only on MAC. Is it

Re: [R-pkg-devel] spp package error "Package required but not available: ‘Rsamtools’"

2018-06-18 Thread Uwe Ligges
Perhaps ask Simon Urbanek, the CRAN Mac maintainer, what is going on here. Best, Uwe Ligges On 18.06.2018 11:33, Carmen M. Livi wrote: Hi all, I have a question regarding the CRAN checks for package spp: https://cran.r-project.org/web/checks/check_results_spp.html We didn't update or chan

[R-pkg-devel] spp package error "Package required but not available: ‘Rsamtools’"

2018-06-18 Thread Carmen M. Livi
Hi all, I have a question regarding the CRAN checks for package spp: https://cran.r-project.org/web/checks/check_results_spp.html We didn't update or change anything in the package, but since a few weeks the CRAN check for OSX gives an error saying that a dependency is not available:  Packag