Re: [R-pkg-devel] Package submission - Issue with pandoc in R CMD check

2017-05-25 Thread Uwe Ligges
This is currently under inspection by the CRAN team. Apparently img.shields.io have changed the cypher settings and pandoc fails with the new settings. We may have to disable *.md processing for some time. Best, Uwe Ligges On 25.05.2017 20:59, Emmanuel Blondel wrote: Dear all, I've just su

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Merlise Clyde, Ph.D.
I have found Travis CI, which can check your package every time you push to GitHub useful - you can set it up to build and check your package against the current version of R and R-devel. See http://juliasilge.com/blog/Beginners-Guide-to-Travis/ and https://docs.travis-ci.com/user/langu

[R-pkg-devel] Package submission - Issue with pandoc in R CMD check

2017-05-25 Thread Emmanuel Blondel
Dear all, I've just submitted a new package named geometa, for which i received the message below. Indeed i had sent in my submission some question mark about the warning i obtain during R CMD check: In case of R release and R devel, I got the following warning: Conversion of 'README.md' faile

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Dason Kurkiewicz
I also recommend reinstalling and making sure it works. I also recommend making sure you actually run roxygen either via roxygenize() or devtools::document() to make sure that your changes get written to the NAMESPACE file. Your NAMESPACE on your github is a few months old still. -Dason Kurkiewic

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Duncan Murdoch
On 25/05/2017 4:55 PM, Maity, Arnab K wrote: ?Thank you all for your kind replies. I made the necessary changes. Now in order to make the changes available on CRAN, do I resubmit the package after changing the version? Yes, though I'd try installing the new one from the tarball on a differen

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Maity, Arnab K
?Thank you all for your kind replies. I made the necessary changes. Now in order to make the changes available on CRAN, do I resubmit the package after changing the version? Arnab Kumar Maity Department of Statistics Texas A&M University 3143 TAMU, Room 401A College Station, TX 77843 aku...@s

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Merlise Clyde, Ph.D.
If you are using roxygen2 for documentation and want to export a function add a line with #' @export to the .R file as part of the function documentation. Running devtools::document() should then update the NAMESPACE See http://r-pkgs.had.co.nz/namespace.html On May 25, 2017, at 8:55 AM,

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Duncan Murdoch
On 24/05/2017 11:59 PM, Maity, Arnab K wrote: Dear R Package developers, Apologies for cross posting. I posted the following message on R help forum and got advised to post here. I created a package on github. It is located at "arnabkrmaity/brlrmr". Then I submitted this on CRAN and it is

Re: [R-pkg-devel] could not find function of a package

2017-05-25 Thread Jim Lemon
Hi Arnab, It will be something like this: importFrom("utils", "read.table") export( fil ) S3method(print,fil) You will probably have to import some functions from the packages that come with R. Then you list all the functions you want to export, separated by commas. Finally you list any methods

[R-pkg-devel] could not find function of a package

2017-05-25 Thread Maity, Arnab K
Dear R Package developers, Apologies for cross posting. I posted the following message on R help forum and got advised to post here. I created a package on github. It is located at "arnabkrmaity/brlrmr". Then I submitted this on CRAN and it is now available on CRAN. When I install this pack

[R-pkg-devel] 'write' call in Fortran gives NOTE when running R CMD check

2017-05-25 Thread Stefan McKinnon Høj-Edwards
Apologies for this double posting; I asked this on Stackoverflow, but hasn't received much attention. I have quite successfully implemented an R package with some Fortran functions. Some of these functions needs to write to files, so naturally I use the Fortran statement `write(unit, fmt) var`. W

Re: [R-pkg-devel] Help package checks using valgrind

2017-05-25 Thread peter dalgaard
I don't think I can offer anything beyond the Valgrind FAQ at this point. I kind of suspect that the other trace -- pointing to where the offending piece of memory was allocated --would provide the better clue about the source of the problem. -pd > On 25 May 2017, at 04:47 , Merlise Clyde, Ph