with your innermost loops, and vectorize
those. Continue outwards from there if you can. For example, you have
> for (i in 1:(m-1)) {
>h[i]<- choose(x[i],LED[j,i])
>}
which could be vectorized as
, and you use a really
huge line width. For example,
veca<-c(4,3,6,5,7,3,2,3,3,6,8,7)plot(veca, lwd=150, col="gray",
type="l")lines(veca, lwd=2)
If you want to be 1 unit away in user coordinates and the x and y scales
are different, it will be a lot harder.
Duncan M
ort.list(as.numeric(groups), decreasing = TRUE)
tmp <- beaver1[o,]
dotchart(tmp$temp, groups=factor(tmp$day), color=as.factor(tmp$activ),
pch=tmp$activ)
Duncan Murdoch
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https:
rred by listing the call stack at the time of the
error.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting
g them to a personal library rather than the system
one (to which you typically don't have write permission).
You should be getting messages about this, but they might be hidden; if
you run
update.packages()
it might be easier to see the messages. You can also try running
.libPath
On 05/11/2015 9:42 PM, Adam Garza wrote:
Trying to install vcd package but can’t
It seems like it tries but runs into some kind of error and so quits.
Maybe it has something to do with the “dependencies” – not sure what that means
Most packages depend on other packages. The vcd package depend
ter(1), as.character(1.1)))
will display as
y
1 1
2 1.1
If the numbers are already in the same column, you could do it as
data.frame(z = sprintf("%g", c(1, 1.1)))
Duncan Murdoch
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u can list the files in the Collate field of your
DESCRIPTION file if you want a different order; see Writing R Extensions
for details).
Duncan Murdoch
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Do you have any comments on this?
I believe
do.call(save, list(as.name(nn), file = "f.RData"))
should do what you want. There are probably other ways, maybe simpler
ones.
If you're interested, the theory here is that do.call() constr
})
names(result)[y] <- paste("plus", y, sep = ".")
}
result
}
The "names" line is optional; with it, you can use
f <- f.factory4()
f$plus.2(2)
but with or without it you can use
f[[2]](2)
Duncan Murdoch
_
though you have discovered vectorized operations. These are
central to good R programming, and are well described in the
Introduction to R manual.
Duncan Murdoch
data <- data.frame(x= c(1,2,3,1,1,1), y = c(1,2,3,4,6,7))fin_hyp <-
list(slope=2,constant=1)outputs <- data['y']
quot; or "spar" parameter that controls the
result much more than the knots.
So I'd say you should read more about smoothing splines before you
continue with your approach.
Duncan Murdoch
Thanks a lot.
Regards!
[[alternative HTML version deleted]]
__
umeric.factor" could be a
"numeric.factor" method for the "is" generic, or a "factor" method for
the "is.numeric" generic. Using names with dots is a bad idea. This
would be all be simpler and less ambiguous if the class had been named
"num
.name/knitr/
which I do not use myself (I use Sweave), but to be fair, is worth considering
as an alternative.
He did, and I'd agree with them. I've switched to knitr for all new
projects and some old ones. knitr should be thought of as Sweave
version 2.
Duncan Murdoch
Second,
larger number is likely not
"10"; try it. (With the options I have on my
computer, I get "1e+05".)
If you want a numeric comparison, be explicit:
subset(Data, as.numeric(Data$group) == ..)
Duncan Murdoch
Karl Schilling
#
Exemplary code for reproducing the abov
On 17/11/2015 2:25 PM, Duncan Murdoch wrote:
On 17/11/2015 2:14 PM, Karl Schilling wrote:
> Dear all,
>
> I have one observation that I do not quite understand. Maybe someone
> can clarify this issue for me.
>
> I have a data frame which I want to subset based on a groupi
on the rgl package lately (for movable 3D graphics); it is
possible to embed those in a PDF document, but not portably (i.e. the
PDF viewer will matter); it is much easier to embed rgl graphics in
HTML. So I tend to use Markdown input through knitr (which calls
Rmarkdown).
Duncan Murdoch
C
ate a density. The formula for that is
sum(h$density*diff(h$breaks)).
Duncan Murdoch
What am I misunderstanding here?
Thanks a lot for the help!
Cheers,
Luca
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'll have to be careful about the sign.
Or you could use the bitops package, bitShiftR(x, 16). In either case
the results will display by default in decimal; if you want a hex
display, use as.hexmode().
Duncan Murdoch
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you can suppress its use.
If you run this before the library call:
options(rgl.useNULL = TRUE)
then rgl won't try to open your X11 display, and the error shouldn't
happen. (You won't be able to see output in X11 either.)
Duncan Murdoch
___
on CRAN is
ancient. You'll need to reinstall it from source for a current one.
Duncan Murdoch
library(geomorph)
Loading required package: rgl
Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: In fun(libname, pkgname) : error in rgl_init
I have al
On 23/11/2015 7:45 AM, Stefan Evert wrote:
On 23 Nov 2015, at 11:50, Duncan Murdoch wrote:
The OSX binary version of rgl on CRAN is ancient. You'll need to reinstall
it from source for a current one.
Since you bring up this point: any chance of getting Mac binaries from CRAN
Some comments on the second part of your message.
On 23/11/2015 7:45 AM, Stefan Evert wrote:
On 23 Nov 2015, at 11:50, Duncan Murdoch wrote:
The OSX binary version of rgl on CRAN is ancient. You'll need to reinstall
it from source for a current one.
Since you bring up this point
y on a
web page, so it may be useful for some systems. (It can sort of display
in RStudio; you need to load the rglwidget package, and call rglwidget()
each time you want to see output. This behaviour is still in flux.)
Duncan Murdoch
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00, 26000)
However, it takes a lot of memory. Make sure you are trying this on a
machine with 10 or 20 GB of free memory. (Each copy of your data takes
about 5 GB; operations may result in duplication.)
Duncan Murdoch
dist<-read.big.matrix('dist.csv',sep=',',header=
t |.packageName| but don't
trust this for the future.)"
The more trustworthy approach is to use packageName() or getPackageName().
Duncan Murdoch
Thanks much again,
-Murat
On Thu, Dec 3, 2015 at 6:42 PM, William Dunlap wrote:
> Every package has in it, after it is insta
ks BUT will place NA
in any columns with numbers as characters.
The reuslt will be this for X19: num NA NA NA NA NA NA NA NA NA NA ..
How can I target my goal with something else than lapply or writing a
line for each type ?
I don't see how a function could reliably detect the types, but it might
using such an old version (released June,
2012). It's not even the last patch release of the 2.15.x series,
which was 2.15.3. And even if you update to the most recent release
(3.2.3), we probably can't help you with Citrix, though if you identify
the problem w
used on arguments that precede ... in the function definition, exact
matching on arguments that follow it.
Duncan Murdoch
If I change the position of ellipses
fn2 <- function(x, ..., st="mean", b=NULL, col.range="black"){
dots <- list(...)
cat("col.range =
ersion number of the pbkrtest package that
you're trying to install. (If R is downloading it for you,
available.packages()["pbkrtest",] will give lots of useful information.)
Duncan Murdoch
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nd lots of
existing code depends on it. Eventually you'll get to know the quirks
of the design.
Duncan Murdoch
Best regards!
Mario
On 11 December 2015 at 15:55, David Winsemius
wrote:
>
> > On Dec 11, 2015, at 9:40 AM, Mario José Marques-Azevedo <
> mariojm...@gmai
n its DESCRIPTION.
You can see it failed tests on CRAN.
Duncan Murdoch
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Fri, Dec 11, 2015 at 11:05 AM, Duncan Murdoch
wrote:
> On 11/12/2015 1:44 PM, Rich Shepard wrote:
>>
>> Trying to update package pbkrtest failed because of
On 12/12/2015 8:44 AM, peter dalgaard wrote:
On 12 Dec 2015, at 10:54 , Martin Maechler wrote:
My conclusion: Breaking such a fundamental lemma of logic as
"the empty set is always true"
Umm, that doesn't make sense to me. Surely you mean that "an AND-operation over an
empty index set is
really subtle version of his cases
{But the gut feeling is wrong, as I argue from now on}.
Personally, I think the problem there is that people forget that == is
vectorised, and for a non-vectorised equality check you really should
use identical:
stopifnot(identical(dim(x), c(3,4)))
identi
oper R installation, and it is only updated when R itself is updated.
Perhaps install.packages() should give a different error message when
you attempt to install a base package.
Duncan Murdoch
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as a warning, not an error).
Duncan Murdoch
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and provide comm
se identical() in such tests, and
> you'd too and would quickly find and fix the "trap" of course..
> So you are mostly right also in my opinion...
Ooops, yes - but you would discover this pretty quickly if you weren't
coding in a email client ;)
I wonder if R is missing a
nk it makes
the intention clearer. I think there would be less confusion if
stopifnot() required its args to be single logical values, so I usually
try to use it that way.
Duncan Murdoch
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ctions
in the R Installation and Administration manual for building a custom
installer.
Duncan Murdoch
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PLEASE do read the posting guide ht
sized amount of
output. If the error doesn't happen, just take a bigger subset, and
possibly leave off the beginning, e.g.
y <- x[101:110,]
for 10 lines starting at line 101.
Duncan Murdoch
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On 30/12/2015 2:32 PM, David Brand wrote:
Error: could not find function "VectorSource" in package tm
Windows 64bit using Rstudio
please advise
If you want advice about the error message, you need to tell us what you
did to produce it.
Dunc
different treatment of "adj" in text()
and mtext(). The former uses one or two values to determine placement
of all strings. The latter uses one value per string.
Duncan Murdoch
Here is a reproducible example.
df1 <- data.frame(V1=rnorm(100))
hist(df1$V1)
mtext("Test"
e
characters. That one works on my OSX system running in RStudio, but you
didn't say what particular output format you wanted, so you'll need to
check it yourself.
Duncan Murdoch
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prediction interval depends on the uncertainty of
individual observations, and that isn't usually reflected in
predictions. For example, if y_i is N(mu, sigma^2), and we fit the
model to N observations, all of our predictions will be ybar, and there
will be no indication o
ites (e.g. compilers), you'll get
it installed from source. If it fails, post the errors and the results
of sessionInfo() here, and we'll probably be able to tell you what to do
next.
Duncan Murdoch
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CentOS about this. That code hasn't
changed in rgl in a long time. It's possible that rgl is wrong, but I'd
need more information from them to convince me.
Duncan Murdoch
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-nvidia.html .
Thanks for following up on this. If I get any other similar reports,
I'll be able to point them to your message.
Duncan Murdoch
Good luck!
-Ben
-Original Message-
From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Wittner, Ben,
Ph.D.
Sent: Friday, Ja
If you're
using knitr, see the discussion of dev = "tikz" in
<http://yihui.name/knitr/>. If you're using Sweave, you probably need
pgfSweave.
Duncan Murdoch
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On 17/01/2016 3:40 PM, Duncan Murdoch wrote:
On 17/01/2016 3:25 PM, Naresh Gurbuxani wrote:
I want to use tikz() function in tikzDevice package so that it generates a pdf
file to be included in the bigger tex file. Below code works, but directly
inserts tikz commands in the output tex file
figure chunk to
<>=
library(tikzDevice)
# added height and width
tikz(file = "tikzFig.tex", width = 4, height = 3)
plot(sin, -pi, 2*pi, main = "A stand alone TikZ plot", xlab = "x", ylab
= "sin(x)")
dummy <- dev.off()
cat("\\input{tikzFig.te
ough space.
- The editor still changes file endings to native format whenever it
saves. It would be better if it handled both Windows and Unix line
endings in both systems, and left them alone unless the user asked them
to be changed.
The positives are too numerous to list here.
Dunc
n your first case there's no referenced variable, just an
expression vector("numeric",2), so you get the error, just as you would with
vector("numeric",2) <- c(0, 3)
Duncan Murdoch
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yntax checking hints in the editor (not just for R, for some other
languages too).
I think Emacs + ESS matches (exceeds if you count non-R stuff) RStudio
in functionality, but it is much harder to learn.
Duncan Murdoch
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On 20/01/2016 1:28 PM, Duncan Murdoch wrote:
On 20/01/2016 1:22 PM, Christofer Bogaso wrote:
> Hi,
>
> Could you please suggest a good R editor for Mac OS X (10.7.5)
> Previously my operating system was Windows and there I used Notepad++,
> I really had very nice experience wit
t by assigning your list
to the element using
TunePar[[1,1]] <- list(G=2)
At this point, TunePar[1,1] is a list containing list(G=2): it prints as
[[1]]
[[1]]$G
[1] 1
To get the result you want, you also need to access the element instead
of the subset: TunePar[[1,1]] will print
$G
end to answer far more questions
on the mailing lists, but ask more on Stackoverflow. I think this is
due to my original point: the experts in the topics I'm asking about
are more likely to be there than here.
Duncan Murdoch
P.S. Your statistics are a little misleading: you counted th
One additional point:
On 23/01/2016 8:33 AM, Duncan Murdoch wrote:
distinction between answers and comments, it's gamification (badges,
One advantage of Stackoverflow is that you can go back and correct silly
errors (like misspelling "its").
likely to lead to flame wars than to improved behaviour.
As others have suggested, if you think someone has been mistreated, then
the public remedy should be to treat them well by giving a better answer
yourself.
Duncan Murdoch
On the other hand noting that the list is not intended to
all I see is
people being mean and nothing much else happening.
Why would you bother to read it if that's all you see? I think there
are examples of posts here which are not at all helpful, and others
which are rude, but the majority are actually helpful (even some of the
rude ones).
D
would be much better if one or both of us posted a more
helpful response when we saw a rude, unhelpful one.
Duncan Murdoch
On 25 January 2016 at 12:07, Duncan Murdoch
wrote:
> On 25/01/2016 2:45 PM, Oliver Keyes wrote:
>
>> I disagree, and would argue that fails to take a s
common is that discussion on threads goes off on a
tangent that has nothing to do with questions or answers. There are
also threads like this one that contain no questions or answers, and are
just full of hot air.
Thanks for posting the link.
Duncan Murdoch
th Yahoo finance data, but got the same error.
That symbol should be "LIQUIDBEES.BO" on Yahoo. Google appears to have
changed its interface, so src = "google" doesn't work. You will
probably have to manually download the Google history, or debug and fix
getSym
or, I see
"'"a"'"
That's not legal R source, because the double quotes that are within the
string are not escaped. To be legal R code you would need
"'\"a\"'"
and to get that you need the original string to look like
"\"&#
ually be local. I don't know about your country, but in many
places, 0 - Cloud works really well.
Duncan Murdoch
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PLEASE do read t
a copy of par() from some earlier version of R. Perhaps you
called edit() on it and saved a copy? The current one doesn't call
.Internal.
Duncan Murdoch
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What version of caret did you install? What version of R are you using?
Duncan Murdoch
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PLEASE do read the posting guide http://www.R
uch difficulties.
I use R and ESS (GNU EMACS). (My ESS console says 'U' in the EMACS
modeline. It means I'm encoding in UTF-8. I tried '1', ISO-8859-1,
also called Latin-1.)
Duncan Murdoch
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2rx(paste(cusip, ".*", ".rds"), trim.head = TRUE, trim.tail = TRUE)
This returns false which leads me to believe that it is not working
No, it returns a regular expression. You need to tell us what you
really did if you want help fixing it.
Duncan Murdoch
glob2rx(paste(cusip,
iles/TIBCO/terrde40/site-library/twitteR" does not have an MD5 file, so
integrity check was not doneCOULD NOT CHECK MD5 CHECKSUMS*
I think you'll need to contact either RStudio or Tibco support for this.
Duncan Murdoch
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On 01/02/2016 10:00 AM, Erik Wright wrote:
Dear Frank,
Thank you for the quick response.
I am familiar with the tradeoffs between integers and doubles. However, I do
not believe this answers my question.
If you look at the help information for the as() function it says: "as(x,
"numeric") u
Don't do that.)
At the end when you want to print, you need to convert to character.
You can use options(digits=) to set the default number of digits, or you
can do the conversion explicitly, using format(), sprintf(), or a
related function. It's up to you how many decimals you
r code in a function, and have
it return the modified version. For example,
population <- doModifications(population)
where doModifications is a function with a definition like
doModifications <- function(MAVR) {
# do all your calculations on MAVR
t that column into a
separate variable, and work with that, either as
MVAR <- tab$population
or
tab$population <- doModifications(tab$population)
following the same patterns as below.
Duncan Murdoch
On Wednesday, February 3, 2016 11:54 AM, Duncan Murdoch
wrote:
On 03
wo into
one and name as name however I can getting an error:
Error in `[.data.frame`(merge.salaries, , `:=`(name, paste("nameFirst", :
could not find function ":="
It looks as though you're using syntax defined by the data.table
package, but you don't have
ifferent results
of sample(10) every time after loading the saved image?
This happens because you are reloading the random number seed. You can
tell R to ignore it by calling
set.seed(NULL)
just after you load the image. See ?set.seed for more details.
Duncan Murdoch
_
On 05/02/2016 11:49 AM, Dénes Tóth wrote:
On 02/05/2016 05:25 PM, Duncan Murdoch wrote:
> On 05/02/2016 11:14 AM, Jinsong Zhao wrote:
>> Dear there,
>>
>> Here is a snipped code,
>>
>> > rm(list = ls())
>> > x <- 123
>> > s
more accurate approach would be
to work out the coordinates of the endpoints and two corners in the
appropriate order, and join them by lines. For example,
plot(c(-2,0,0,2), c(0,0,1,1), type="l")
In either case you'll probably want to change axis labels using xlab or
yla
rt of your session. It lets you set the current directory to the one
with your files in it, using a old-fashioned Windows dialog box. If
things stop working the way you expect, run getwd() to get R to print
what's the current directory.
4. You can also use file.choose() to use Win
tiple arguments to the list()
function, which constructs a list containing them. as.list() doesn't
want a bunch of arguments, it will just ignore most of them.
Duncan Murdoch
for( i in 1:length(list1) )
cat( "i is ", list1[[i]], "\n" )
retur
On 07/02/2016 7:14 PM, Ben Tupper wrote:
Hi,
On Feb 7, 2016, at 6:24 PM, Duncan Murdoch wrote:
On 07/02/2016 6:12 PM, Robert Sherry wrote:
I would like to write a function in R that would take a variable number
of integers as parameters. I do not have a pressing reason to do this, I
am
ot;", interval))
stop <- as.numeric(sub(".*-", "", interval))
(start + stop)/2
Duncan Murdoch
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PLEASE do read t
about it.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self
mples/zipball/masterError in
curl::curl_fetch_memory(url, handle = handle) : Timeout was reached
You'll need to ask RStudio this.
Duncan Murdoch
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function.
Remember to quote the name; you probably need
dir.create("specdata")
Duncan Murdoch
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PLEASE do read the posting g
")
Or you can look at class(Data).
Duncan Murdoch
When I tried
as.data.frame(unlist(Data))
The Data converted to a vector not to a data frame. Any idea ?
Thank you in advance
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h
e
package?
The stats package is a base package. It is part of R, you don't need to
install it.
Duncan Murdoch
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PLEASE do read the pos
On 18/02/2016 3:03 PM, Divakar Reddy wrote:
Dear R users,
I would to install 'tcltk' in R2.3.3 but getting below error when I tried
to install.
Can you please suggest me?
Don't try to install a base package. You already have it. You aren't
allowed to update
'll see "Platform: i386-w64-mingw32/i386 (32-bit)" in the startup
banner, and you need a 32 bit DLL. If you are running 64 bit R, you'll
see "Platform: x86_64-w64-mingw32/x64 (64-bit)", and you need a 64 bit
DLL. 32 bit Windows can only r
, you're on your own.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented
cies + 1) ~ (n=1) + Format(digits=2)*
(Sepal.Length + Sepal.Width)*(mean + sd), data=iris )
html(tab)
```
Duncan Murdoch
On Mon, Feb 22, 2016 at 12:17 PM, Santosh wrote:
Dear Rxperts..
I am able to generate tables using Tables R package..
However, when I have been unsuccessful in using kab
(with horizontal lines and customized text
inserted at the beginning of a group..
If you wanted LaTeX output, you could do this like the example at the
end of section 2.1.5 in the vignette. (You might want to combine that
with subsetting as in section 3.3.)
Duncan Murdoch
\begin{tabular}{
reproducible example that doesn't use any contributed packages. If you
can't leave out the packages, try to reduce it to just one, and ask the
maintainer of that package about it.
Duncan Murdoch
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.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained
27;re not allowed to change things there.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and pr
On 24/02/2016 11:18 AM, Bert Gunter wrote:
Almost surely no.
You are confusing "&&" with "&"
?"&"
I think Bob had it right...
Duncan Murdoch
-- Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
On 24/02/2016 11:27 AM, Bert Gunter wrote:
I would have assumed that age, etc. were vectors; but that's why I
said "almost" surely.
Okay, so you were confusing if () with ifelse().
Duncan Murdoch
-- Bert
Bert Gunter
"The trouble with having an open mind is that peop
nt to do here. Could you put together a short
example showing what input you have and what output you'd like?
Duncan Murdoch
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PLEASE d
hose years, i want to see every
point with the respectively date in the axis.
How can I do that?
Plot it with axes = FALSE, and then add each axis using the Axis() (or
axis() or axis.Date() or...) function.
Duncan Murdoch
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e" are
included in the Rtools collection. (I usually use pedump; I forget
whether nm works on .dll files, or only .so files.)
Duncan Murdoch
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n="")
mtext(expression(paste("Theoretical experiment using ", pCO[2], "=
40")), 3, line = 3)
mtext("SID = 0.13 M", 3, line = 2)
mtext("ATOT = 0.2 M and pKa = 6.8", 3, line = 1)
You can move things around by changing the "line = " args, a
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