6.3 (Data frames). Note
that dd$B is nearly the same as dd[["B"]], not dd["B"].
Duncan Murdoch
(I am perfectly happy if you write the explanation but if it saves you time
to point to some reference that works fine for me.)
Regards,
Eric
On Wed, Oct 25, 2017 at 2:27
essage the interpreter.
Has someone an idea why the original program code stops (only) at line
698:
tools::assertWarning(ap2 <- available.packages(repos =
"http://foo.bar";))?
Perhaps your system is resolving foo.bar to a web address. If I use a
URL for a web page that does
On 01/11/2017 12:02 PM, Albrecht Kauffmann wrote:
Dear Duncan,
Many thanks!
Am Mi, 1. Nov 2017, um 16:17, schrieb Duncan Murdoch:
On 01/11/2017 8:11 AM, Albrecht Kauffmann wrote:
Hi all,
after compiling R-3.4.2 on opensuse leap 42.3, make check failed. Until
R-3.4.1 I never had a problem
On 01/11/2017 1:08 PM, Albrecht Kauffmann wrote:
Am Mi, 1. Nov 2017, um 17:40, schrieb Duncan Murdoch:
On 01/11/2017 12:02 PM, Albrecht Kauffmann wrote:
Dear Duncan,
Many thanks!
Am Mi, 1. Nov 2017, um 16:17, schrieb Duncan Murdoch:
On 01/11/2017 8:11 AM, Albrecht Kauffmann wrote:
Hi all
can have a function
addOne <- function(x) {
x + 1
}
and you can call it lots of times from other functions without printing
a line each time.
Duncan Murdoch
On Thu, Nov 2, 2017 at 11:54 AM, David Winsemius wrote:
On Nov 2, 2017, at 9:27 AM, Ed Siefker wrote:
I have a function:
On 07/11/2017 3:01 PM, Tom Backer Johnsen wrote:
Dear R-help,
I am running a Mac under Sierra, with R version 3.4.2 and RStudio 1.1.383. When
running head () or tail () on an object in a script using source (
ning: replacing previous import ‘stats::filter’ by ‘dplyr::filter’
when loading ‘testpkg’.
Duncan Murdoch
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PLEASE do read the posting guide
les don't exist, and his student's
suggestion seems like a reasonable idea, more in the spirit of named
imports than using "library(pkg)" or "require(pkg)".
Duncan Murdoch
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nyone tell me how to put the HTML documentation files in the right
place?
By default the documentation is produced on demand, but you can ask to
produce it all at once. See section 2.2 of the Installation and
Administration manual.
Duncan Murdoch
__
or after the first line:
Error: unexpected '{' in " for (i in length(SeparatedGroupsofmealsCombs) {"
Once that line is thrown away, the message about i makes sense:
AllMAFs[[i]] <- apply( SeparatedGroupsofmealsCombs[[i]], 2,
function(x)maf( tabulate( x+1) ))
refers to
main ="Well Site Construction Emissions",
legend.text=c("Land", "Access", "Well"),
args.legend = list(x="bottom", horiz="TRUE", bty="n",
inset=c(-0.5, -0.25)))
So you'll need to give us a reproducible exa
't know which one is
better for you, but I like the vector solution better.
Duncan Murdoch
Hope this will help.
Many thanks,
Maria
Στις 11:53 π.μ. Δευτέρα, 20 Νοεμβρίου 2017, ο/η Duncan Murdoch
έγραψε:
On 20/11/2017 6:38 AM, Maria Lathouri via R-help wrote:
> Dear all
>
and
for NumPy/Pandas/SciPy ?
The web page <http://r4stats.com/articles/popularity/> is fairly up to
date. It doesn't say what things were like in 2002, but in early 2017,
the ranking was Python > R > SAS in the count of job ads in data
science. In 2012 it was SAS > Python >
}
> format(object.size(closureList), units = "Mb")
[1] "19.2 Mb"
> Rprof(NULL)
> summaryRprof()
Error in rowsum.default(c(as.vector(new.ftable), fcounts),
c(names(new.ftable), :
unimplemented type 'NULL' in 'HashTableSetup'
In addition: Warning m
ed in HTML. You
need the OpenGL development packages. On Ubuntu, that probably means
MesaGL, but I don't know the names of the development packages.
Duncan Murdoch
* installing *source* package ‘rgl’ ...checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
n't have a function for this, but Google says it
exists in a couple of packages: spatstat, Hmisc. But you seem to be
asking about a definition rather than a function: it is obtained simply
by normalizing the weights to sum to 1, then evaluating cumulative sums
of them.
Duncan
t is looking for in /usr/lib/x86_64-linux-gnu. Do you have that
file? Is it there, and marked as executable?
It's probably a symbolic link; on an old Ubuntu system I just checked,
it points to mesa/libGL.so, which is also a symlink, pointing to
mesa/libGL.so.1.2.0, which is executable.
was in /usr/lib/x86_64-linux-gnu/mesa/.
Duncan Murdoch
/usr/lib/libGL.so.1
/usr/lib/x86_64-linux-gnu/libGL.so /usr/lib/x86_64-linux-gnu/libGL.so.1
/usr/lib/x86_64-linux-gnu/mesa/libGL.so
Thanks again,
Santosh
On Fri, Nov 24, 2017 at 12:39 PM, Duncan Murdoch
mailto:murdoch.dun...@gmail.
I'd recommend uninstalling it, making sure there's no
remnant of Mesa anywhere, then reinstalling it.
Duncan Murdoch
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PLEASE d
have indicated that the header is missing. You're
missing the library. According to one of your earlier messages, it
sounded as though the missing file is
/usr/lib/x86_64-linux-gnu/mesa/libGL.so.1.2.0.
Duncan Murdoch
* installing *source* package ‘rgl’ ... ** package ‘rgl’ successfully
;- function() {
source("file.R", local = TRUE)
}
sourceit()
With respect to your last comment (turning the code in file.R into
functions which don't leave their locals behind): I think that would be
the best solution. You may find it clunky now, but in the long run it
likely wi
R-help is the wrong list for questions about developing packages. I'll
send a reply to you and to R-package-devel, which is the right list.
Duncan Murdoch
On 07/12/2017 4:43 AM, Pijush Das wrote:
Hello Sir,
I have been trying to create a package in R.
When I have put the check option
if" explains it pretty
clearly. Think of ifelse() as a function with vector inputs and a
vector output, and if() as a flow control construction.
Duncan Murdoch
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names(formals(obj1$prepanel {
But obj1$prepanel is NULL in your test case. NULL is not a legal
argument to formals(), and it now warns about it.
Duncan Murdoch
On 14/12/2017 1:12 AM, Richard M. Heiberger wrote:
library(latticeExtra)
Loading required package: lattice
Loading requi
producing two vectors.
But in what way do they differ? I looked at 3 entries, and they were
identical.
Duncan Murdoch
Also one of my function returns negative values, even after double checking the
code, which should return only positive values..
Whats wrong..? Reinstall R?
Thank
again.
The first two steps are particularly easy in RStudio: for 1, just click
"Install and restart" in the build pane, and for 2, navigate in the file
pane to the man directory, and choose "Set as working directory" from
the "More" tab.
Duncan Murdoch
e"-list called another function. Eg.
How can account$plot() call account$pastSaldo() ?
There's no particular support for having them see each other the way
you've defined them. A better way to define them would be as local
functions within the account body; then they'd be
On 11/01/2018 7:43 PM, AbouEl-Makarim Aboueissa wrote:
Dear All:
I am trying to shade the area between the two lines; *line 1* and *line 2*.
The help page for polygon() gives some examples of this.
Duncan Murdoch
You can use this code as an example.
x100<-c(-1,1,2,3,4,5,6,3)
y100
g all of R.
Duncan Murdoch
when i tried the following command : *library(help = "stats") * , it gave
me this output (*see picture*), so i contacted the Maintainer of the
package at (*r-c...@r-project.org *) but he said that
i write to the wrong place.
(i want to install those packages
On 12/01/2018 1:11 PM, Karim Mezhoud wrote:
Hi,
Did you try install.packages('stats').
That will not work, as stats is a base package. It comes with R, and
can't be changed. The stats package should never be missing in a proper
install of R.
Duncan Murdoch
Let we
kages("devtools") # if not already installed...
devtools::install_github("USGS-R/DVstats")
but that fails for me, with this message:
ERROR: dependencies ‘smwrBase’, ‘smwrGraphs’, ‘smwrStats’, ‘smwrQW’ are
not available for package ‘DVstats’
It doesn't look promising.
both of them, produce the object you want to save, and save it. If
some objects have the same names in both files, do this carefully: the
second load will overwrite the first one. A safe way to do it is
described here: https://www.r-bloggers.com/safe-loading-of-rdata-files-2/
Duncan Murdoch
ot;ab.RData")
because the second saved image overwrites the first one. It'll be okay
if all the variable names are different in a.RData and b.RData, but will
lose values from a.RData if any of them have the same names as objects
in b.RData. See the link I posted earlier to avoid t
. Those functions are
similar to save/load, but they only write a single variable and don't
write variable names, so you can do things like
saveRDS(x, "x.rds")
y <- readRDS("x.rds")
to read the value of x directly into y.
Duncan Murdoch
On 1/16/2018 8:06 PM, Dun
ode is
being found. The output might not mean much to you, but perhaps others
here will spot the issue.
If that doesn't make the problem obvious, then post a link to your
Github source and someone else will be able to try it.
Duncan Murdoch
__
R-
help page, you'll
see that it also documents setSessionTimeLimit.
Duncan Murdoch
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values of j for which the
condition is false, k is getting populated by NA values. k is getting the
following values (for a given snl):
Try this:
k <- 1
k[5] <- 5
k
and you should see what's happening.
Duncan Murdoch
k
[1]1 NA NA NA 5 6 NA NA 9 10 11 NA NA NA NA 16
ogether a way to run R despite security policies
that forbid it. And nothing to stop them from inserting their own
malicious code into the .zip file.
Duncan Murdoch
On Fri, Jan 26, 2018, 00:49 Gabor Grothendieck
wrote:
Can you clarify what the nature of the security restriction is?
If you can&
CHANGES file is
only linked into the help system on Windows. Since R 2.15.0 Windows
changes are announced in the same file(s) as other changes.) The
CHANGES entry was
- Added Rgui script editor by Chris Jackson.
This happened in svn revision 28991, which I committed in April, 2004.
Duncan
ape
that space, but I can't remember what the escape sequence is. (Escapes
in Windows can be processed by the command shell or Rscript.exe or both,
so it's hard to get them right.) Another alternative might be to change
directory to that path and then use a relative path for the R script
ouldn't take long to find the offending line
by bisection: comment out the last half of the script, if it works,
that's where the problem is, so comment only the last quarter, etc.
Duncan Murdoch
Michael Ashton, CFA
Managing Principal
Enduring Investments LLC
W: 973.457.4602
C
arkdown process. (Not to mention that
such an approach would be fragile at best.)
You don't say what format the source is, but if it is LaTeX, you just
need to add some comments at the beginning, rename ending in .Rnw, and R
will recognize plain LaTeX files as Sweave vignettes.
See t
at you'll need to edit it for all vignettes, not just
the strange ones.
Duncan Murdoch
-- Mike
On Mon, Feb 19, 2018 at 1:20 AM, Duncan Murdoch
wrote:
On 18/02/2018 9:06 PM, Michael Hannon wrote:
Greetings. The group that I work with has just started using the approach
outlined in K
ns in ..., not their names.
I think base R doesn't have a way to do this (but I may be wrong). You
can do it using some the rlang package. For example, this seems to work:
deparseDots <- function(...) {
unname(sapply(rlang::exprs(...), deparse))
}
Duncan Murdoch
___
2
$ message: chr "could not find function \"notgood\""
$ call : language notgood()
- attr(*, "class")= chr [1:3] "simpleError" "error" "condition"
so you could write a test based on the message, or based on the call to
see where the
Of course, in this example, x1 is 0, so it gives the same answer.
Duncan Murdoch
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Sat, Feb 24, 2018 at 9:59 AM, Val wrote:
Thank you Jim
I wanted a final data frame after replacing the NA's to "0"
x1 = rbind(unique(preval),m
h* the true and false values, and
then selects entries from each. Just use an if statement.
Duncan Murdoch
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PLEASE do read the posting gui
ler")
> rnorm(1)
[1] -0.1613431
> save <- .Random.seed
> rnorm(1)
[1] 0.6706031
> .Random.seed <- save
> rnorm(1)
[1] -0.4194403
If .Random.seed were the complete state, the 2nd and 3rd rnorm results
would be the same.
Duncan Murdoch
/Henrik
On Sun, Mar 4, 2018 at 1
page, or read its
Description carefully (where "all" is used in the technical sense of the
all() function), ignoring the final few words which seem to suggest that
c(TRUE, TRUE) is not okay.
Duncan Murdoch
So you have already violated that specific warning, which led to the
confus
)
m<-mmat(x)
uhat<-m%*%y
Should be "uhat <- m \%*\% y"
Duncan Murdoch
dstat(uhat)
}
--
st...@ntu.edu.tw (S.T. Yen)
[[alternative HTML version deleted]]
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actor.
I'm all for learning more languages and using the one that's best for
each job, but for people who don't know Python, it would be helpful to
list the aspects in which it excels. When should an R user choose to
write something in Python instead?
Duncan Murdoch
_
onnect function. So maybe you could use
that instead of DBI and odbc.
Duncan Murdoch
Best regards,
Thierry
library(DBI)
con <- dbConnect(odbc::odbc(), .connection_string =
"Driver=the_drive;Server=our_server;Database=the_database;Trusted_Connection=Yes;")
dbGetQuery(con, sql_sta
x27;t know
if it would for Adrian.
Duncan Murdoch
Cheers,
Adrian
Adrian Friskin | Senior Technology Support Officer | Learning Environments -
Labs Team | Learning Environments
and Technology Services | Queensland University of Technology | Synergy
Building Level 3 - LETS, 88 Musk Aven
quot;P1", "P2", "P3", "P4"}}
set_symdiff(A,i)
Output: {{}, {"P1", "P2", "P3", "P4"}}
i also tried with set_complement() .But it does not subtract the empty
subset from the bigger set. It seems it doesn't recognise it.
ent windows version")
The Windows FAQ 2.2 says, "Windows XP is no longer supported", so I
think you're out of luck. XP went past "end-of-life" in 2014.
Other than switching to a more recent Windows version, your choices are
switching to a completely different OS, o
ums...)?
or an equivalent function?
Something like
apply(df[,c("A", "B")], 1, function(x) if (all(is.na(x))) NA else sum(x,
na.rm = TRUE))
should do what you want.
Duncan Murdoch
Thank you for your help
Stefano
(oo)
--oOO--( )--OOo---
On 22/03/2018 5:28 AM, Holger Taschenberger wrote:
Dear Duncan,
thank you for your reply.
On Wed, 21 Mar 2018 11:58:15 -0400
Duncan Murdoch wrote:
The Windows FAQ 2.2 says, "Windows XP is no longer supported", so I think you're out of
luck. XP went past "
'matie' package depends on 'proxy', and 'proxy' depends on R version
3.4.0 or more. You could try installing 'proxy' using
install.pacakges("proxy"), but I'm guessing it will fail unless you
update your R version first.
Duncan Murdoch
(RobPer)
FastTau(Z,Y)
fast=FastTau(Z,Y)
abline(fast, col="yellow")
abline() doesn't know what to do with the "fast" object. It isn't a
vector containing intercept and slope, it's a list containing them. So
you'll need something like
abline(unlist(fa
esn't give the answer, but it links to ?family, which does.
Duncan Murdoch
What is the difference between these cases ? For my opinion the first one
is a logit model, and second one is a binomial probability model , right?
Many thanks.
[[alternative HTML versi
please let me know my mistake and how to correct my syntax ?
Your function should return x after modifying it. As it is, it returns
the value of x$NewCol [ x[ ,3] < x[ 1,2] ] <- "C", which is "C". So
change it to
MyFunction <- function(x) {
x$NewCol [ x[ ,3]
and may have fixed the errors,
but that would require an installation from source, which not every
Windows user is comfortable with.
Duncan Murdoch
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On 26/04/2018 1:54 PM, Akhilesh Singh wrote:
My thanks to Dr. John Fox and Dr. Duncan Murdoch. But, I have upgraded
all my R-3.4.3 libraries to R-3.5.0, and I have not backed-up copies of
old version. So, I would give a try each to the solutions suggested by
John Fox and Dengan Murdoch.
Here
ibed. If people just run the
installer and accept the defaults, it works. Don't trust bloggers,
trust CRAN.
2. data.table fails its self-tests in 3.5.0, as shown on CRAN.
Apparently fixes are in the works, but being able to install it doesn't
mean it will work properly.
evaluation is whether the function looks at the expression in promises,
or only looks at the value when it is evaluated. substitute() is the
usual way to look at the expression, but packages like rlang define others.
Other issues that you haven't touched on that probably belong in a
png() or pdf() instead of the default device.
Duncan Murdoch
Could you tell me how to produce a graphic divice with correct size
that I set? I need this function because the graphic divice cannot
accomendate all of the graph I make with some of plot tools such as
ggtree. In ggtree plot, p
on't fit, then you might get a smaller one, and you'll need to choose a
non-screen device such as png() or pdf() instead of the default device.
Duncan Murdoch
Could you tell me how to produce a graphic divice with correct size
that I set? I need this function because the graphic divice
only when R is
updated. You can't install it from CRAN unless you install all of R.
Duncan Murdoch
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PLEASE do read the posting guid
on that you see).
Since he has more reputation points, he gets to moderate decisions
like that, and can perhaps undo them.
Duncan Murdoch
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ode I tried to install the package from the archive and the errors I received:
install.packages("/polycor_0.7-8.tar", repos=NULL, type="source")
Warning: invalid package ‘/polycor_0.7-8.tar’
As Michael said, you shouldn't unpack the tar.gz file.
Duncan Murdoch
Error: E
d from CRAN. It's unfortunate that
install.packages() doesn't do this automatically when you install a
tar.gz file, but that's the way it is.
Duncan Murdoch
Warning message:
In install.packages("polycor_0.7-8.tar.gz", repos = NULL, type = "source") :
instal
my code:
plot(survfit(Y~addicts$clinic), fun="cloglog", las=2)
Did you try las = 1? That's what the documentation (in ?par) says to do.
Duncan Murdoch
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If you're using
Windows, you need to right click on the file, choose "Open with...",
then pick RStudio and check the box saying you want to open all files
that way.
Duncan Murdoch
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version number. But packages installed under R x.y.z are not
usable in R x.y+1.w.
Duncan Murdoch
Alternatively, is there a function I can run that will rebuild all
installed packages after I upgrade R versions?
Regards,
Rich
__
R-help@r
ntic Versioning V2.0.0' Parser
Perhaps you really want one of those.
Duncan Murdoch
I tried downloading it from
install.packages('semnet',repos='http://cran.us.r-project.org')
and install.packages('semnet',repos='http://cran.revolutionanalytics.com/')
a
; "a" "ab" "abc"
In a data frame, I do see it right justified:
x
1a
2 ab
3 abc
etc.
It is easy to change the printing of data frames:
print.data.frame <- function(x, ..., right = FALSE) {
base::print.data.frame(x, ..., right = right)
}
> data.frame(x
On 05/06/2018 7:49 PM, zListserv wrote:
p.s. It seems to work for print command, but not for head, tail, or printing a
data frame, per below. Any way fix the others so they all left-justify?
You haven't shown us what you did.
Duncan Murdoch
___
ab
6 abc
I don't get that, because I didn't redefine the generic, only the methods.
R> x
rep(c("a", "ab", "abc"), 7)
1a
2 ab
3
nyone know how to solve this problem?
You need to install the stringi package first. Normally that is done
automatically, but sometimes suitable versions are not available, and it
needs to be done manually.
Duncan Murdoch
__
R-help@r-project.o
know the answer to this question. Others like it tend to appear
on Stack Overflow with the "knitr" tag, so that might be a better place
to ask if no answer appears here. But like here, that forum asks for
reproducible examples (i.e. the R code that doesn't quite work).
Dunca
at you want, but I think you'll have to ask
your supervisor for the definition used in your area.
Duncan Murdoch
My question is, am I right if I state that the significance in terms of
sigmas (sign) is given by: p = 2*(1-pnorm(sign)) since I guess the
p-value returned by R is for a two side
I would like to call upon the collective wisdom of the R community to
help me decide.
Thanks, and my apologies for the off-topic post.
I'd agree with you: "are".
Duncan Murdoch
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to R-devel yesterday, and got a response
asking you some questions about your setup.
Duncan Murdoch
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, 350, density = 5, border = rgb("red")
rect(110, 300, 175, 350, density = 5, border = rgb(red=1, green=0,
blue=0, alpha=0.1))
I'm not sure what is the quickest way to work out the rgb values for a
named colour (col2rgb can do it, but not in a con
ld be much better to write
x <- runif(N, 0, 2)
rbinom(N, 1, 1 - exp(-2.5*x))
because it is so much more clearly related to the original problem
statement. Perhaps it would be a few microseconds slower, but that
would be saved many times over when any aspect of the problem statement
was modified
ably may need to set
.libPaths() explicitly to see them.
To check for this, print .libPaths() just after installing the packages,
and again when starting a new session. If the printed list of paths is
different, you'll have problems.
Duncan Murdoch
__
un for a satisfactory
sample, and how correlated later draws will be. Propp and Wilson's
perfect sampling algorithm might allow an exact draw, though I don't
quite see how, and I'm not sure it would be worth the trouble. Just run
for a few thousand steps and
time_seq) - 1)){
tab[time + 1,,] <- t(matrix(round(runif(ind, 0, 100)), ind, 9))
}
And then you can do away with the loop entirely, since none of the
values depend on earlier calculations. Just generate
ind*length(time_seq) uniforms, and put them in the array in the right
order. You could
hose, you need more steps:
f <- fc
body(f) <- body(f)
attr(f, "srcref") <- getSrcref(fc)
Duncan Murdoch
f
#function (x)
#{
# x <- x + 1
# pi * x
#}
f(1)
#[1] 6.283185
Hope this helps,
Rui Barradas
Às 03:25 de 16-07-2018, Benjamin Tyner escreveu:
Hi
Give
On 21/07/2018 12:39 PM, John Kane via R-help wrote:
Either I am doing something very stupid or my R installation has a glitch. What
am I missing?
dd1 <- 50
dd2 <- 54
mean(dd1, dd2)
[1] 50 # wrong
Read the help page ?mean. You are specifying the parameters x and trim.
Duncan M
ent **if(TRUE){print("A"))*
Because braces don't affect invisibility. Auto-printing ignores objects
that are marked as invisible. You would get two lines printed if you
asked for explicit printing, e.g.
print( if(TRUE){print("A")} )
or remove the invisibility later, e
better, but
it should be code that anyone can run.
Duncan Murdoch
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.h
This page tells how to disable it there:
https://support.apple.com/kb/ph19072?locale=en_US
There's little point providing a link to a Microsoft page for doing this
on Windows, because their help page links are not very durable. The
main one that Google finds describes itself as obsole
using:
CreateObject("Wscript.Shell").Run R.exe CMD BATCH MyGUI.R , 0, TRUE
I think this is more of a Microsoft question than anything specific to
R. How do you ask VBS to show you a process that it is running?
No idea where to go with VBS questions.
Duncan Murdoch
2) for the
I think it really is
the higher level thing (VBS in your case, cmd.exe if you run that at a
prompt) that might have the ability to do what you want.
Duncan Murdoch
Thank you for your time.
On Wed, Apr 19, 2017 at 12:14 PM, Duncan Murdoch
mailto:murdoch.dun...@gmail.com>> wrote:
On
lexible (though maybe harder to use) than xtable.
I can't look at it now, but will try to remember to do so in a few hours
if I don't see a better solution posted first.
Duncan Murdoch
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easy to do using Shiny or RStudio
Connect (a paid service, see https://www.rstudio.com/products/connect/),
which could run on your own server. So I'd try to relax your constraints.
Duncan Murdoch
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sure whether you are using MDY or
DMY; I used DMY):
strptime("01-01-2016T14:02:23.325", format="%d-%m-%YT%H:%M:%OS")
Duncan Murdoch
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derings in dates? Doesn't
matter for this example, but it would for "01-02-2016T14:02:23.325"
Duncan Murdoch
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PLEASE do read t
survival saved in their workspace, and are using that one instead of the
current one.
- Some part of your code returns functions, and one of those is making
this call based on an object produced in an earlier version of survival.
- There are really two versions of survival on the search path (or
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