Re: [R] plot graph with error bars trouble

2007-10-02 Thread Jim Lemon
Marcelo Laia wrote: > ... > ... but it plot the same point for one > Mutant before the some point of other Mutant in the same Time. > > I uploaded a .ps file to divshare for clarify what I want to explain. > http://www.divshare.com/download/2182890-49c > > and I uploaded a true dataset: > http:/

Re: [R] plot graph with error bars trouble

2007-10-01 Thread Marcelo Laia
Dear Ben Bolker, Hadley Wickham, Jim Lemon and all I'm very thank to you! I tried all suggestion and I wiil comments it next. Ben Bolker suggestion is very nice and I did a little changes in col=c(1,1),pch=c(1,16) and I include a xlab, ylab and a legend(5, 4, c("02H02","306"), pch = c(1,16), co

Re: [R] plot graph with error bars trouble

2007-10-01 Thread Gabor Grothendieck
On 10/1/07, hadley wickham <[EMAIL PROTECTED]> wrote: > > These seem nearly identical to what you can get with R-Forge or with > > TortoiseSVN (and likely other svn clients too). Since any developer > > is likely to have an svn client a web interface more sophisticated than > > what is already ava

Re: [R] plot graph with error bars trouble

2007-10-01 Thread hadley wickham
> These seem nearly identical to what you can get with R-Forge or with > TortoiseSVN (and likely other svn clients too). Since any developer > is likely to have an svn client a web interface more sophisticated than > what is already available via the net has less utility than if this info were > n

Re: [R] plot graph with error bars trouble

2007-10-01 Thread Gabor Grothendieck
On 10/1/07, hadley wickham <[EMAIL PROTECTED]> wrote: > On 10/1/07, Gabor Grothendieck <[EMAIL PROTECTED]> wrote: > > On 10/1/07, hadley wickham <[EMAIL PROTECTED]> wrote: > > > > > > The biggest drawback (to me) to both google code and R-forge, is their > > > failure to offer a nice interface to b

Re: [R] plot graph with error bars trouble

2007-10-01 Thread hadley wickham
On 10/1/07, Gabor Grothendieck <[EMAIL PROTECTED]> wrote: > On 10/1/07, hadley wickham <[EMAIL PROTECTED]> wrote: > > > > The biggest drawback (to me) to both google code and R-forge, is their > > failure to offer a nice interface to browser the svn repository and > > view the timeline of changes.

Re: [R] plot graph with error bars trouble

2007-10-01 Thread Gabor Grothendieck
On 10/1/07, hadley wickham <[EMAIL PROTECTED]> wrote: > > The biggest drawback (to me) to both google code and R-forge, is their > failure to offer a nice interface to browser the svn repository and > view the timeline of changes. I particularly like trac (e.g. > http://src.ggobi.org/) despite it'

Re: [R] plot graph with error bars trouble

2007-10-01 Thread hadley wickham
> >> It's something I have thought a little bit about, but I haven't made > >> much progress. Ideally, if it's something that I do for ggplot2, I > >> should do it for all my other R packages too. > > I don't see why doing it for *some* package(s) should entail > doing it for all of the

Re: [R] plot graph with error bars trouble

2007-10-01 Thread Martin Maechler
> "GaGr" == Gabor Grothendieck <[EMAIL PROTECTED]> > on Sun, 30 Sep 2007 21:15:37 -0400 writes: GaGr> On 9/30/07, hadley wickham <[EMAIL PROTECTED]> wrote: >> On 9/30/07, jiho <[EMAIL PROTECTED]> wrote: >> > On 2007-September-30 , at 22:40 , hadley wickham wrote: >> >

Re: [R] plot graph with error bars trouble

2007-10-01 Thread Jim Lemon
Marcelo Laia wrote: > Hi, > > I have a data set like this: > > MutantRepTime OD > 02H02100.029 > 02H02200.029 > 02H02300.023 > 02H02180.655 > 02H02280.615 > 02H02380.557 > 02H021121.776 > 02H0221

Re: [R] plot graph with error bars trouble

2007-09-30 Thread Gabor Grothendieck
On 9/30/07, hadley wickham <[EMAIL PROTECTED]> wrote: > On 9/30/07, jiho <[EMAIL PROTECTED]> wrote: > > On 2007-September-30 , at 22:40 , hadley wickham wrote: > > >> hadley wickham wrote: > > >>> [...] > > >> PS if one specifies "errorbars" without specifying min and max one > > >> gets > > >> th

Re: [R] plot graph with error bars trouble

2007-09-30 Thread hadley wickham
On 9/30/07, jiho <[EMAIL PROTECTED]> wrote: > On 2007-September-30 , at 22:40 , hadley wickham wrote: > >> hadley wickham wrote: > >>> [...] > >> PS if one specifies "errorbars" without specifying min and max one > >> gets > >> the error > >> > >> Error in rbind(max, max, max, min, min, min) : > >

Re: [R] plot graph with error bars trouble

2007-09-30 Thread jiho
On 2007-September-30 , at 22:40 , hadley wickham wrote: >> hadley wickham wrote: >>> [...] >> PS if one specifies "errorbars" without specifying min and max one >> gets >> the error >> >> Error in rbind(max, max, max, min, min, min) : >> cannot coerce type closure to list vector >> >>

Re: [R] plot graph with error bars trouble

2007-09-30 Thread hadley wickham
> hadley wickham wrote: > > I'd do this a little differently, using the reshape > > (http://had.co.nz/reshape) and ggplot2 (http://had.co.nz/ggplot2) > > packages: > > > > library(reshape) > > library(ggplot2) > > > > # Get data in format required for reshape > > df <- rename(df, c("OD" = "value"))

Re: [R] plot graph with error bars trouble

2007-09-30 Thread Ben Bolker
hadley wickham wrote: > I'd do this a little differently, using the reshape > (http://had.co.nz/reshape) and ggplot2 (http://had.co.nz/ggplot2) > packages: > > library(reshape) > library(ggplot2) > > # Get data in format required for reshape > df <- rename(df, c("OD" = "value")) > > # Summarise and

Re: [R] plot graph with error bars trouble

2007-09-30 Thread hadley wickham
On 9/30/07, Ben Bolker <[EMAIL PROTECTED]> wrote: > Marcelo Laia gmail.com> writes: > > > > > Hi, > > > > I have a data set like this: > > > > [snip] > > > I need to plot a graph OD over the time for each one mutant with error bars. > > > > > > > ## I put your data in a temporary file, this reads

Re: [R] plot graph with error bars trouble

2007-09-30 Thread Ben Bolker
Marcelo Laia gmail.com> writes: > > Hi, > > I have a data set like this: > [snip] > I need to plot a graph OD over the time for each one mutant with error bars. > > ## I put your data in a temporary file, this reads it x = read.table("tempdata.txt",header=TRUE) ## compute means and sta