Re: [R] R Large Dataset Problem

2012-04-13 Thread efulas
I am using the codes below, options(max.print=5.5E5) x=rep(1,1052) b=read.fwf(file="efetez.binary", widths=c(6,x),header=FALSE) and i get " C stack usage is too close to the limit" this error. I want to get my data like ; molecul id v1 v2 v3 . 190

Re: [R] R Large Dataset Problem

2012-04-13 Thread jim holtman
When using 'scan' I had no problem reading a string that had 1000 'columns' > x <- scan('/temp/tempxx.txt', what = list(0L, '')) Read 14 records > > str(x) List of 2 $ : int [1:14] 129876 129876 129876 129876 129876 129876 129876 129876 129876 129876 ... $ : chr [1:14] "10101011100000011

Re: [R] R Large Dataset Problem

2012-04-13 Thread Milan Bouchet-Valat
Le vendredi 13 avril 2012 à 05:44 -0700, efulas a écrit : > Thank you very much for your helps guys. Both message help me to run the data > in R. However, R is omitting many columns from my data. Am i missing > something? Please read the posting guide. If you don't provide the code you ran and the

Re: [R] R Large Dataset Problem

2012-04-13 Thread efulas
Thank you very much for your helps guys. Both message help me to run the data in R. However, R is omitting many columns from my data. Am i missing something? Many Thanks -- View this message in context: http://r.789695.n4.nabble.com/R-Large-Dataset-Problem-tp4554469p4554698.html Sent from the

Re: [R] R Large Dataset Problem

2012-04-13 Thread Rainer M Krug
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 13/04/12 14:20, Milan Bouchet-Valat wrote: > Le vendredi 13 avril 2012 à 04:32 -0700, efulas a écrit : >> Dear All, >> >> I have a problem with my data. First problem is that my data is really large >> and R is >> omitting some columns from my dat

Re: [R] R Large Dataset Problem

2012-04-13 Thread Alekseiy Beloshitskiy
I would perform data pre-processing before loading in R. Best, -Alex From: r-help-boun...@r-project.org [r-help-boun...@r-project.org] on behalf of efulas [ef_u...@hotmail.com] Sent: 13 April 2012 14:32 To: r-help@r-project.org Subject: [R] R Large Datase

Re: [R] R Large Dataset Problem

2012-04-13 Thread Milan Bouchet-Valat
Le vendredi 13 avril 2012 à 04:32 -0700, efulas a écrit : > Dear All, > > I have a problem with my data. First problem is that my data is really > large and R is omitting some columns from my data. Is there any way to read > the whole data without omitting. How did you import it? Please be precis