Re: [R] Problems in writing code for circos plot

2020-02-17 Thread Bert Gunter
Wrong list -- (for which statistical methods question are generally offtopic anyway). Post here instead: https://www.bioconductor.org/help/ Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloo

Re: [R] Problems in writing code for circos plot

2020-02-17 Thread pooja sinha
Hi All, I had previously mentioned that I have large data set with methylation values ranging from 0-1. The data contains around 3 million rows of values corresponding to the chromosomal locations. I want to split/sort my data for plot using circos plot. I thought of doing like sorting the value

Re: [R] Problems in writing code for circos plot

2020-01-26 Thread Jim Lemon
Hi Puja, Three things: 1) Your data files are very large. If you do manage to get circular plots out of them with the circlize library they will probably be very dense. 2) The structure of your data includes too many levels in "Chrom" to get the circlize functions to work. I had to pare them back t