Put your function in try() and the test it's class
gene.seq <- try(getSequence (id=gene.map[,"ensembl_transcript_id"],
type="ensembl_transcript_id", seqType="3utr", mart=hmart))
if(class(gene.seq) == "try-error"){
#code to run when an error occurs
} else {
#code to run when no er
gotError <- try(gene.seq <- getSequence
(id=gene.map[,"ensembl_transcript_id"], type="ensembl_transcript_id",
seqType="3utr", mart=hmart))
if (inherits(gotError, 'try-error')){.error occurred, do recovery}
On Mon, Aug 3, 2009 at 11:53 AM, wrote:
> Sometimes the following function call
Hi,
On Aug 3, 2009, at 11:53 AM, wrote:
Sometimes the following function call causes a database exception:
gene.seq <- getSequence (id=gene.map[,"ensembl_transcript_id"],
type="ensembl_transcript_id",
+ seqType="3utr", mart=hmart)
I understand the above functi
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