;blurred" for byte compiled
functions, and as the default JIT level is high, I had
occasionallz wanted an easy way to revert the byte compilation
before debugging or another way to get rid of this
drawback..
Martin
>>
>> Best regards
>> Petr
>>
11 AM
To: PIKAL Petr ; r-help@r-project.org
Subject: Re: [R] debug only top level function
On 06/06/2019 4:55 a.m., PIKAL Petr wrote:
Dear all
I have a question about debug function. I did not use it for long time but my
vague memory tell me, that when I used debug(myfunction) in past, only
d be worth considering to add something about it
to debug help page.
Best regards
Petr
> -Original Message-
> From: Duncan Murdoch
> Sent: Thursday, June 6, 2019 11:11 AM
> To: PIKAL Petr ; r-help@r-project.org
> Subject: Re: [R] debug only top level function
>
> On 0
On 06/06/2019 4:55 a.m., PIKAL Petr wrote:
Dear all
I have a question about debug function. I did not use it for long time but my
vague memory tell me, that when I used debug(myfunction) in past, only
myfunction was debugged and browser ignored any embedded function.
example (simple)
fff <-
Duncan,
Thanks for the help.
Since I am the only person using this machine and I couldn’t figure out where
to put the option statement aside from:
C:\Program Files\R\R-3.1.2\etc
In the file Rprofile.site
The option that I wanted was:
options(debug.font = "Consolas 12”)
Which allowed me to h
On 30/03/2015 1:50 PM, Keith S Weintraub wrote:
> Folks,
>
> I would like change some of the options for the Tk window that pops up when
> using the debug package.
>
> I know how to change the options: e.g. options(debug.font = "Courier 12
> italic”).
>
> Is there a way to “preset” these in my
On 11/12/2012 1:17 PM, Asis Hallab wrote:
Dear R experts,
recently I tried to debug a R function with an internal lapply call.
When debugging I seem not to be able to use the "n" command to debug the
inner function called by lapply.
How could I achieve this?
Jim gave you one solution. Another
Typically when I am debugging an 'lapply', I put a browser call inside
the lapply function that is being called and then make sure I 'source'
in the code instead of copy/paste -- the copy/paste will use any
trailing statements after the lapply call as commands to the "browser"
function.
Here is th
If you read my bug report, I just ran the same thing on both regular
mode and debug mode. That is why I think it is related with R base,
though there might be some other bugs related with glmulti or rJava.
Peng
On 08/10/2012 04:03 PM, peter dalgaard wrote:
> On Aug 10, 2012, at 21:23 , Zhang, P
Ok. I will stop here. I have just created a bug report.
https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15013
If anyone is interested, please see if you can reproduce it.
Thanks,
Peng
On 08/10/2012 03:04 PM, peter dalgaard wrote:
> Not to spoil your fun, but this is getting a bit off-topic
On Aug 10, 2012, at 21:23 , Zhang, Peng wrote:
> Ok. I will stop here. I have just created a bug report.
>
> https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15013
...which is exactly what you should NOT do, if the bug is likely to live in a
contributed package!!
-pd
>
> If anyone is i
Not to spoil your fun, but this is getting a bit off-topic for R-help. If you
wish to continue the debugging process in public, I think you should move to
R-devel.
Also, it sounds like the problem is in the glmulti package, so you might want
to involve its maintainer at some point.
-pd
On A
Thanks! It is interesting that Windows has pointed the problem to Java.
So it is probable that how I did my debug led me to the wrong direction.
Since I was unsure how to debug S4 class, I copied the source implement
R function from glmulti package into my testing program.
The segmentation faul
On 2012-08-10 15:42, Zhang, Peng wrote:
You are right. I am running Arch Linux. However, I obtained a
segmentation directly, so didn't know where to find the bug??
> library("glmulti")
Loading required package: rJava
> testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol
=
You are right. I am running Arch Linux. However, I obtained a
segmentation directly, so didn't know where to find the bug??
> library("glmulti")
Loading required package: rJava
> testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol
= 50)))
> glmulti(Y~(X1+X2+X3+X4+X5+X6+X7+X8
On 2012-08-10 06:10, Zhang, Peng wrote:
Thanks to both for your reply.
library(glmulti)
testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol = 50)))
glmulti(Y~(X1+X2+X3+X4+X5+X6+X7+X8+X9+X10+X11+X12+X13+X14+X15)*X16, data
= testdata, level = 2)
This is reproducible to get a seg
Thanks to both for your reply.
library(glmulti)
testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol = 50)))
glmulti(Y~(X1+X2+X3+X4+X5+X6+X7+X8+X9+X10+X11+X12+X13+X14+X15)*X16, data
= testdata, level = 2)
This is reproducible to get a segmentation fault. But I have troubles to
e
On Aug 9, 2012, at 9:14 PM, David Winsemius wrote:
>
> On Aug 9, 2012, at 4:56 PM, Zhang, Peng wrote:
>
>> Dear all,
>>
>> I had a R segmentation fault, and then invoked debug mode and ran step
>> by step.
>
>
>> 2. Why does the same function behave differently under debug and regular
>> m
On Aug 9, 2012, at 4:56 PM, Zhang, Peng wrote:
Dear all,
I had a R segmentation fault, and then invoked debug mode and ran step
by step.
When I reached "terms(Y~X1*X2*...*X16)", I would then have
"segmentation" fault. However, if I just ran this under regular "R
interactive" mode, it would be
On 12-02-10 12:48 PM, Justin Haynes wrote:
You can add
if(is.na(tab[i])) browser()
or
if(is.na(tab[i])) break
see inline
You can also do this temporarily. Supposing that you used
source("foo.R") to enter a function with that code in it, and you want
the check on line 10, you'd enter
se
You can add
if(is.na(tab[i])) browser()
or
if(is.na(tab[i])) break
see inline
On Fri, Feb 10, 2012 at 7:22 AM, ikuzar wrote:
> Hi,
>
> I'd like to debug in a loop (using debug() and browser() etc but not
> print()
> ). I'am looking for the first occurence of NA.
> For instance:
>
> tab = c(1
I'll try,
Here is a piece of code it fails for me, the error I get is always the same,
and it happens in most of my functions. The problem is always the same
trying to execute 'mtrace'.
Thanks!
--- execution --
> mtrace(index_remap)
Error in x[[i]] : subscript out of
Hi Deivit,
Can you offer a self contained example of r code when the function fails
for you?
Contact
Details:---
Contact me: tal.gal...@gmail.com | 972-52-7275845
Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (He
On 11-06-03 4:49 PM, Hui Du wrote:
Hi List,
I have a question regarding debug R code. I know I can use
debug(fuction_name) and when code runs to that point, it will go to debugger. My question
is inside debugger, how to stop a code at a specified line. For example, in C (gdb or
cameron.bracken wrote:
>
> You need to look for a file (it may not be in your project directory) that
> contains "___LOCK" in its file name and delete it.
>
Specifically, the rogue lockfile should be in the same directory as
options('tikzMetricsDictionary'). Or, if you haven't set a permanent
l
Not sure if you ever figured this out, but I was just directed to this post.
You need to look for a file (it may not be in your project directory) that
contains "___LOCK" in its file name and delete it. filehash creates this to
prevent multiple writes to the same file at the same time and somehow
Thank you, Greg. The issue was in the simulation logic, where one of
the values was not changing correctly for some iterations...
On Jan 10, 3:20 pm, Greg Snow wrote:
> Not sure, but one possible candidate problem is that in your simulations one
> iteration ended up with fewer levels of a facto
Not sure, but one possible candidate problem is that in your simulations one
iteration ended up with fewer levels of a factor than the overall dataset and
that caused the error.
There is no recode function in the default packages, there are at least 6
recode functions in other packages, we cann
> -Original Message-
> From: Rolf Turner [mailto:r.tur...@auckland.ac.nz]
> Sent: Monday, December 14, 2009 2:07 PM
> To: Brian Diggs
> Cc: r-help@r-project.org Help
> Subject: Re: [R] debug an error that incapacitates R?
>
>
> Wouldn't sink.number() gi
uncan Murdoch
Cc: r-help@r-project.org Help
Subject: Re: [R] debug an error that incapacitates R?
Hello
And thank you for the quick answer.
On 12/13/09, Duncan Murdoch wrote:
I think you need to go back to old-fashioned debugging methods.
Identify
the line the triggers the error, by using debug(
> -Original Message-
> From: Liviu Andronic [mailto:landronim...@gmail.com]
> Sent: Sunday, December 13, 2009 4:05 AM
> To: Duncan Murdoch
> Cc: r-help@r-project.org Help
> Subject: Re: [R] debug an error that incapacitates R?
>
> Hello
> And thank you for the
Hello
And thank you for the quick answer.
On 12/13/09, Duncan Murdoch wrote:
> I think you need to go back to old-fashioned debugging methods. Identify
> the line the triggers the error, by using debug() and single stepping
> through sosInit(), or by adding print() or cat() statements to it (or
On 13/12/2009 5:31 AM, Liviu Andronic wrote:
Dear all
How should I attempt debugging this error?
sosInit()
Error: invalid connection
When this happens R refuses to run anything:
2+2
Error: invalid connection
sessionInfo ()
Error in stdout() : invalid connection
Debugging it seems impossi
On 10/10/2009 7:00 PM, Another Oneforyou wrote:
Hi,
I'm working through "R-debug-tools.pdf" and on page 7 it describes doing:
Browse[1]> debug(sum) ## Flag sum for debugging
however, when I try this, I get:
Browse[1]> debug(sum)Error in debug(fun) : argument must be a closure
Does anyone know why
On Oct 1, 2009, at 11:04 AM, Tammy Ma wrote:
provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
Heritage Laboratories
West Hartford, CT
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-hel
Hi Tammy,
On Oct 1, 2009, at 11:04 AM, Tammy Ma wrote:
Hi, R-Users,'
I have written a programe to process the bunch of files in one folder.
But there is a error came out;
How can I know which file returns error when being processed?
I have tested the first 1-10th files, no any problem. But the
From: metal_lical...@live.com
To: r-help@r-project.org
Subject: Debug
Date: Thu, 1 Oct 2009 15:21:42 +0300
Hi, R-Users,'
I have written a programe to process the bunch of files in one folder.
But there is a error came out;
How can I know which file returns error when being processed?
I
Tammy Ma wrote:
Hi, All
I have so many files in my directory. I got the following error. At this time,
I couldn't use debug() to check error one by one because so many files getting
invloved. How can I get some idea about my error??
The usual advice: simplify the problem until it's obvio
,
Eduard
-Original Message-
From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
Sent: 04 February 2009 14:04
To: Eduard Pieterse (Macquarie Securities)
Cc: r-help@r-project.org
Subject: Re: [R] Debug help
On 2/4/2009 6:28 AM, ehxpieterse wrote:
> Hi,
>
> I am getting the follow
On 2/4/2009 6:28 AM, ehxpieterse wrote:
Hi,
I am getting the following error: argument is of length zero
My code:
temp <- 0
for (j in 1 : 3) {
for (k in 1 : 12) {
temp <- temp + as.double(C[k, (q - 1) * 3 + j]) * as.double(m_ret_reb[i + k
- 1, j+1])
}
}
Why would R handle my temp variable as
Thanks a lot...I realised where I was going wrongif I declare debug
= F then my problem is getting solved.
-Original Message-
From: jim holtman [mailto:[EMAIL PROTECTED]
Sent: Wednesday, November 12, 2008 9:12 AM
To: Agarwal, Rahul-A
Cc: r-help@r-project.org
Subject: Re: [R
What is 'debug' defined as? Include at least the assignment or
'str(debug)'. If you have not assigned anything to it, then 'debug'
is a function in the basic set of R functions and may be giving you a
message like:
> if (debug) 1
Error in if (debug) 1 : argument is not interpretable as logical
>
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