Re: [R] Cox regression and p-values

2007-09-19 Thread Terry Therneau
Fisher's "exact" test is for comparing two proportions, which is a completely different problem than Cox regression, and so the test has no relevance to this problem. It has, however, sparked a large literature of debate; already alluded to by many of the responses. The tests in the coxph

Re: [R] Cox regression and p-values

2007-09-18 Thread Peter Dalgaard
Duncan Murdoch wrote: > On 9/18/2007 12:41 PM, Daniel Brewer wrote: > >> Hello, >> I might be barking up the wrong tree here, but I want to make sure I >> have a full understanding of this. What I would like to know is what >> tests are performed to give the p-values for each variable in the ta

Re: [R] Cox regression and p-values

2007-09-18 Thread Marc Schwartz
I'll throw in a more recent citation: Chi-squared and Fisher-Irwin tests of two-by-two tables with small sample recommendations Stat in Med 26:3661-3675; 2007 http://www3.interscience.wiley.com/cgi-bin/abstract/114125487/ABSTRACT to which Frank Harrell has offered some comments here (bottom of pa

Re: [R] Cox regression and p-values

2007-09-18 Thread Cody Hamilton
Daniel, With regards to the use of Fisher's exact test when cell counts are less than 5, take a look at: D'Agostino, RB, Chase, W and Belanger, A (1988). 'The appropriateness of some common procedures for testing the equality of two independent binomial populations.' 42:198-202. Regards, -

Re: [R] Cox regression and p-values

2007-09-18 Thread Duncan Murdoch
On 9/18/2007 12:41 PM, Daniel Brewer wrote: > Hello, > I might be barking up the wrong tree here, but I want to make sure I > have a full understanding of this. What I would like to know is what > tests are performed to give the p-values for each variable in the table > that is the result of coxph