Re: [R] Convert filogenetic tree to binary matrix

2011-04-29 Thread vanderlei52
Hi Ben, Thank you for your help. I did the same question in the r-sig-phylo mailing list. Liam Revell gave the following solution: temp<-prop.part(tree) X<-matrix(0,nrow=length(tree$tip),ncol=length(temp),dimnames=list(tree$tip.label,tree$node.label)) for(i in 1:ncol(X)) X[temp[[i]],i]<-1 Vand

Re: [R] Convert filogenetic tree to binary matrix

2011-04-28 Thread Ben Bolker
vanderlei52 yahoo.com.br> writes: > > I need to create a binary matrix with all node of a phylogenetic tree and the > presence of each taxo in their respective node. > I would suggest that you try this question on the r-sig-phylo mailing list instead. The phylobase package has an ancestors(