Re: [R] spearman correlation and p-value as a matrix

2013-02-14 Thread arun
#4  NaN  0.000 #5  NaN  0.000 Hope it helps. A.K. - Original Message ----- From: Ozgul Inceoglu To: arun Cc: R help Sent: Thursday, February 14, 2013 10:22 AM Subject: re:Re: [R] spearman correlation and p-value as a matrix you are right! I was so happy to find out the p-va

Re: [R] spearman correlation and p-value as a matrix

2013-02-14 Thread Ozgul Inceoglu
317 > # Otu00209    Otu00218 >#1  NaN -0.12705141 >#2  NaN -0.61522514 >#3      NaN -0.89010286 >#4  NaN  0.03036290 >#5  NaN  0.08266317 > >A.K. > > > >- Original Message - >From: Ozgul Inceoglu >To: R help >Cc: >Sent:

Re: [R] spearman correlation and p-value as a matrix

2013-02-14 Thread arun
- Original Message - From: Ozgul Inceoglu To: R help Cc: Sent: Thursday, February 14, 2013 1:10 AM Subject: Re: [R] spearman correlation and p-value as a matrix Thank you all for the answers. I really need to learn a lot. Bu I also discover cor2m(x, y, trim = TRUE, alpha = 0.05) in ecod

Re: [R] spearman correlation and p-value as a matrix

2013-02-14 Thread arun
- colnames(res2)  identical(res1,res2) #[1] TRUE A.K. - Original Message - From: Ozgul Inceoglu To: arun Cc: Sent: Thursday, February 14, 2013 6:17 AM Subject: re:Re: [R] spearman correlation and p-value as a matrix Dear Arun, I bothered you this week alot, but it seems like that y

Re: [R] spearman correlation and p-value as a matrix

2013-02-13 Thread Ozgul Inceoglu
N > >head(resrnew) >#           [,1] >#Otu00022_ag1  0.1309307 >#Otu00029_ag1    NaN >#Otu00039_ag1  0.1309307 >#Otu00042_ag1    NaN >#Otu00101_ag1 -0.6546537 >#Otu00105_ag1    NaN > >A.K. > > > > >- Original Message - &g

Re: [R] spearman correlation and p-value as a matrix

2013-02-13 Thread arun
A.K. ----- Original Message ----- From: Ozgul Inceoglu To: r-help@r-project.org Cc: Sent: Wednesday, February 13, 2013 4:48 AM Subject: [R] spearman correlation and p-value as a matrix I have two data matrices that I want to make the correlation between each column from data1 and each column fro

Re: [R] spearman correlation and p-value as a matrix

2013-02-13 Thread Jim Lemon
On 02/13/2013 08:48 PM, Ozgul Inceoglu wrote: I have two data matrices that I want to make the correlation between each column from data1 and each column from data 2 and also calculate the p-value Matrices dont have the same size and I tried such a script. bg<- read.table (file.choose(), heade

[R] spearman correlation and p-value as a matrix

2013-02-13 Thread Ozgul Inceoglu
I have two data matrices that I want to make the correlation between each column from data1 and each column from data 2 and also calculate the p-value Matrices dont have the same size and I tried such a script. > bg <- read.table (file.choose(), header=T, row.names) > bg > Otu00022 Otu00029 Otu