Re: [R] smoothScatter plot

2012-10-10 Thread JiangZhengyu
Hi John,I installed & but somehow it did not work on my computer, while I tried another computer - it works. Thanks for all your communications.Best,Zhengyu Date: Tue, 9 Oct 2012 05:16:59 -0800 From: jrkrid...@inbox.com Subject: RE: [R] smoothScatter plot To: zhyjiang2...@hotmail.com

Re: [R] smoothScatter plot

2012-10-06 Thread John Kane
: jrkrid...@inbox.com Subject: RE: [R] smoothScatter plot Hi John, Thanks for your link. Those plots look pretty but way too complicated in terms of making R code.  Maybe my decription is not clear.  But could you take a look at the attached png? I saw several publications showing smoothed plots like

Re: [R] smoothScatter plot

2012-10-05 Thread JiangZhengyu
,Zhengyu Date: Fri, 5 Oct 2012 06:36:38 -0800 From: jrkrid...@inbox.com Subject: RE: [R] smoothScatter plot To: zhyjiang2...@hotmail.com CC: r-help@r-project.org In line John Kane Kingston ON Canada -Original Message- From: zhyjiang2...@hotmail.com Sent: Fri, 5 Oct 2012 05:41:29

Re: [R] smoothScatter plot

2012-10-05 Thread John Kane
In line John Kane Kingston ON Canada -Original Message- From: zhyjiang2...@hotmail.com Sent: Fri, 5 Oct 2012 05:41:29 +0800 To: jrkrid...@inbox.com Subject: RE: [R] smoothScatter plot Hi John, Thanks for your email. Your way works good. However, I

Re: [R] smoothScatter plot

2012-10-04 Thread JiangZhengyu
: RE: [R] smoothScatter plot To: zhyjiang2...@hotmail.com CC: r-help@r-project.org Hi, Do you mean something like this? = scatter.smooth(x,y)scatter.smooth(x,y) = It looks like invoking that dcols

Re: [R] smoothScatter plot

2012-10-04 Thread John Kane
hn Kane Kingston ON Canada -Original Message- From: zhyjiang2...@hotmail.com Sent: Thu, 4 Oct 2012 05:19:14 +0800 To: jrkrid...@inbox.com Subject: RE: [R] smoothScatter plot Hi John, Thanks for your reply. But I cannot figure out how to use dput(). I included dat

Re: [R] smoothScatter plot

2012-10-02 Thread John Kane
2...@hotmail.com > Sent: Tue, 2 Oct 2012 11:38:31 +0800 > To: r-help@r-project.org > Subject: [R] smoothScatter plot > > > > > > Hi, I want to make a plot similar to sm1 (attached). The code I tried is: > dcols <- densCols(x,y) > smoothScatter(x,y, col = dco

[R] smoothScatter plot

2012-10-01 Thread JiangZhengyu
Hi, I want to make a plot similar to sm1 (attached). The code I tried is: dcols <- densCols(x,y) smoothScatter(x,y, col = dcols, pch=20,xlab="A",ylab="B") abline(h=0, col="red") But it turned out to be s1 (attached) with big dots. I was wondering if anything wrong with my code. Thanks,Zhengy

Re: [R] SmoothScatter plot range issue

2008-09-22 Thread Henrik Bengtsson
Hi, Bioconductor.org is the home of the geneplotter package. You get a quicker response if you ask there. /Henrik On Mon, Sep 22, 2008 at 7:06 AM, Jason Pare <[EMAIL PROTECTED]> wrote: > Hello, > > I am attempting to use smoothScatter to plot a heatmap of locations of > events in an x-y axis. W

[R] SmoothScatter plot range issue

2008-09-22 Thread Jason Pare
Hello, I am attempting to use smoothScatter to plot a heatmap of locations of events in an x-y axis. When I plot the heatmap without passing xlim and ylim parameters, it fills the plot area but the perspective is a bit skewed. I would like to standardize these plots to a uniform window size that d