Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Prof Brian Ripley
>From the 'R Installation and Administration Manual': Note that @env{TMPDIR} will be used to execute @command{configure} scripts when installing packages, so if @code{/tmp} has been mounted as @samp{noexec}, @env{TMPDIR} needs to be set to a directory from which execution is allowed.

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Liviu Andronic
On Wed, Apr 9, 2008 at 9:30 PM, Prof Brian Ripley <[EMAIL PROTECTED]> wrote: > I've never seen that. Is there something unusual about the filesystem so > it does not recognize rgl/configure is executable? (We've seen that on SMB > filesystems with the wrong mount options.) > In /etc/fstab, I ha

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Prof Brian Ripley
Right, that shows that the rgl configure script is not being run and no linking is being done to any GL libraries. I've never seen that. Is there something unusual about the filesystem so it does not recognize rgl/configure is executable? (We've seen that on SMB filesystems with the wrong mou

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Charles C. Berry
On Wed, 9 Apr 2008, Liviu Andronic wrote: > Dear R users, > > This is a follow-up of a recent discussion on building rgl on Gentoo > Linux. Please read bellow. > > On Tue, Mar 18, 2008 at 7:24 PM, Charles C. Berry <[EMAIL PROTECTED]> wrote: >> Below substitute 'nvidia-drivers' or whatever you use

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Liviu Andronic
Dear Duncan and Brian, thank you for the quick replies. Please see bellow. On Wed, Apr 9, 2008 at 6:11 PM, Prof Brian Ripley <[EMAIL PROTECTED]> wrote: > We'll need to see the output from install.packages("rgl") to have much idea: > localhost liviu # R CMD INSTALL "/home/liviu/inst/dwn_R/rgl_0.77

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Prof Brian Ripley
We'll need to see the output from install.packages("rgl") to have much idea: R CMD ldd /usr/lib/R/library/rgl/libs/rgl.so would also be informative. On Wed, 9 Apr 2008, Duncan Murdoch wrote: > On 4/9/2008 10:53 AM, Liviu Andronic wrote: >> Dear R users, >> >> This is a follow-up of a recent di

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Duncan Murdoch
On 4/9/2008 10:53 AM, Liviu Andronic wrote: > Dear R users, > > This is a follow-up of a recent discussion on building rgl on Gentoo > Linux. Please read bellow. > > On Tue, Mar 18, 2008 at 7:24 PM, Charles C. Berry <[EMAIL PROTECTED]> wrote: >> Below substitute 'nvidia-drivers' or whatever you

Re: [R] rgl build warnings and loading error on Linux

2008-04-09 Thread Liviu Andronic
Dear R users, This is a follow-up of a recent discussion on building rgl on Gentoo Linux. Please read bellow. On Tue, Mar 18, 2008 at 7:24 PM, Charles C. Berry <[EMAIL PROTECTED]> wrote: > Below substitute 'nvidia-drivers' or whatever you use for > > > emerge -D mesa > revdep-r

Re: [R] rgl build warnings and loading error on Linux

2008-03-18 Thread Charles C. Berry
On Tue, 18 Mar 2008, Liviu Andronic wrote: > On Mon, Mar 17, 2008 at 11:07 PM, Liviu Andronic <[EMAIL PROTECTED]> wrote: >> This is what I have on my system: >> localhost liviu # locate libGL.so >> /usr/lib/opengl/xorg-x11/lib/libGL.so.1 >> /usr/lib/opengl/xorg-x11/lib/libGL.so.1.2 >> /usr/li

Re: [R] rgl build warnings and loading error on Linux

2008-03-18 Thread Liviu Andronic
On Mon, Mar 17, 2008 at 11:07 PM, Liviu Andronic <[EMAIL PROTECTED]> wrote: > This is what I have on my system: > localhost liviu # locate libGL.so > /usr/lib/opengl/xorg-x11/lib/libGL.so.1 > /usr/lib/opengl/xorg-x11/lib/libGL.so.1.2 > /usr/lib/opengl/xorg-x11/lib/libGL.so > /usr/lib/libGL.so

Re: [R] rgl build warnings and loading error on Linux

2008-03-17 Thread Charles C. Berry
On Mon, 17 Mar 2008, Liviu Andronic wrote: > On Mon, Mar 17, 2008 at 1:54 AM, Charles C. Berry <[EMAIL PROTECTED]> wrote: >> emerge -pD R >> >> to see what would get rebuilt. (This should rebuild out-of-date >> dependencies.) > > emerge -tvaD R proposes me to emerge all out-dated package

Re: [R] rgl build warnings and loading error on Linux

2008-03-17 Thread Duncan Murdoch
Liviu Andronic wrote: > On Sun, Mar 16, 2008 at 10:00 PM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: > >> It sounds as though it is not finding the OpenGL libs when it >> configures. That function should be in libGL.so. >> > > This is what I have on my system: > localhost liviu # locate l

Re: [R] rgl build warnings and loading error on Linux

2008-03-17 Thread Liviu Andronic
On Mon, Mar 17, 2008 at 1:54 AM, Charles C. Berry <[EMAIL PROTECTED]> wrote: > emerge -pD R > > to see what would get rebuilt. (This should rebuild out-of-date > dependencies.) emerge -tvaD R proposes me to emerge all out-dated packages found on my system, from gimp to dbus (currently 29

Re: [R] rgl build warnings and loading error on Linux

2008-03-17 Thread Liviu Andronic
On Sun, Mar 16, 2008 at 10:00 PM, Duncan Murdoch <[EMAIL PROTECTED]> wrote: > It sounds as though it is not finding the OpenGL libs when it > configures. That function should be in libGL.so. This is what I have on my system: localhost liviu # locate libGL.so /usr/lib/opengl/xorg-x11/lib/libGL.s

Re: [R] rgl build warnings and loading error on Linux

2008-03-17 Thread Paul Smith
On Sun, Mar 16, 2008 at 7:38 PM, Liviu Andronic <[EMAIL PROTECTED]> wrote: > I have several problems in using rgl-0.77 (and recent earlier > versions) on Gentoo Linux with a custom-built v. 2.6.22 kernel. > Currently I use R-2.6.1. > > When I build rgl, > # R CMD INSTALL "/home/liviu/inst/dwn/

Re: [R] rgl build warnings and loading error on Linux

2008-03-16 Thread Charles C. Berry
On Sun, 16 Mar 2008, Dirk Eddelbuettel wrote: > > On 16 March 2008 at 17:00, Duncan Murdoch wrote: > | On 16/03/2008 3:38 PM, Liviu Andronic wrote: > | > Dear useRs, > | > > | > I have several problems in using rgl-0.77 (and recent earlier > | > versions) on Gentoo Linux with a custom-built v. 2.6

Re: [R] rgl build warnings and loading error on Linux

2008-03-16 Thread Dirk Eddelbuettel
On 16 March 2008 at 17:00, Duncan Murdoch wrote: | On 16/03/2008 3:38 PM, Liviu Andronic wrote: | > Dear useRs, | > | > I have several problems in using rgl-0.77 (and recent earlier | > versions) on Gentoo Linux with a custom-built v. 2.6.22 kernel. | > Currently I use R-2.6.1. | > | > When I bu

Re: [R] rgl build warnings and loading error on Linux

2008-03-16 Thread Duncan Murdoch
On 16/03/2008 3:38 PM, Liviu Andronic wrote: > Dear useRs, > > I have several problems in using rgl-0.77 (and recent earlier > versions) on Gentoo Linux with a custom-built v. 2.6.22 kernel. > Currently I use R-2.6.1. > > When I build rgl, > # R CMD INSTALL "/home/liviu/inst/dwn/R/rgl_0.77.tar.gz

[R] rgl build warnings and loading error on Linux

2008-03-16 Thread Liviu Andronic
Dear useRs, I have several problems in using rgl-0.77 (and recent earlier versions) on Gentoo Linux with a custom-built v. 2.6.22 kernel. Currently I use R-2.6.1. When I build rgl, # R CMD INSTALL "/home/liviu/inst/dwn/R/rgl_0.77.tar.gz" or install.packages("rgl", dependencies=TRUE, method ="wget