Re: [R] pheatmap query

Hi Tanya, Have you looked at the return value of pheatmap? ret<-pheatmap(counts_filtered_df,scale="row",cluster_col=FALSE, cluster_row=TRUE,border_color=NA,show_rownames = TRUE) str(ret) names(ret$tree_row) names(ret$tree_col) Look at what is in "ret" to see if your numeric matrix is hidden ther

[R] pheatmap query

Hi I am plotting a pheatmap using following line in a R code pheatmap(counts_filtered_df,scale="row",cluster_col=FALSE,cluster_row=TRUE,border_color=NA,show_rownames = T) I want to extract the row names in the same order as shown in pheatmap and the z scores for them. So basically a num