Re: [R] need help with understanding coxph encoding

2012-02-08 Thread summer
Thank you. The factor is useful. What if I did not factor it,and the x is listed as 2 2 1 1 1 1 2 2 2 and so on. How would I know the HR for coxph is group2/group1 or group1/group2? I understand it's just inverse but how can I identify the exact HR? -- View this message in context: http://r.7896

Re: [R] need help with understanding coxph encoding

2012-02-08 Thread Terry Therneau
Coxph is a regression model, so the coefficient for "x" is the change in prediction value for each 1 unit change in x. Just like regression, it won't matter if you code it as 0/1 or 1/2 or 105 vs 106. If you code it as 0 vs 10 the coefficient will be divided by 10 though. The relative hazard

Re: [R] need help with understanding coxph encoding

2012-02-07 Thread David Winsemius
On Feb 7, 2012, at 9:11 PM, summer wrote: Hi, in coxph, coxph(Surv(time, status)~x,data=alm). How to encode x? For example, if x has two groups, the treatment group and control group. if I encode them as 1 and 2. Is the HR results treatment/control? What if I encode them as 0 and 1. I am co

[R] need help with understanding coxph encoding

2012-02-07 Thread summer
Hi, in coxph, coxph(Surv(time, status)~x,data=alm). How to encode x? For example, if x has two groups, the treatment group and control group. if I encode them as 1 and 2. Is the HR results treatment/control? What if I encode them as 0 and 1. I am confused with how survival package works for HR. W