Re: [R] manage algorithm in R studio

2016-02-28 Thread Boris Steipe
This is probably fun to write, but it's been done many times before. For practical purposes, use the pairwiseAlignment() function in the Biostrings package, distributed by the bioconductor project. cf.: https://www.bioconductor.org/packages/3.3/bioc/vignettes/Biostrings/inst/doc/PairwiseAlignme

Re: [R] manage algorithm in R studio

2016-02-28 Thread Jeff Newmiller
Quite possibly, if Google is to be trusted. -- Sent from my phone. Please excuse my brevity. On February 28, 2016 1:03:28 AM PST, "Matej Matjašec" wrote: >Hello, > >I need some instruction about R studio library, that using algorithm >Needleman - Wunsch and Smith - Waterman. How can I present

[R] manage algorithm in R studio

2016-02-28 Thread Matej Matjašec
Hello, I need some instruction about R studio library, that using algorithm Needleman - Wunsch and Smith - Waterman. How can I present this algorithm in R, calculate maximum score sequence alignment ? It is possible that things in R? Thank you very much in advance for your reply. Greetings, Mat