Using nmds from package labdsv will work, but you are confusing some
elements with ordiplot from package vegan. The plot function in labdsv
does not produce a new object, it simply plots the requested ordination.
There is an accompanying command "plotid" that puts labels on the
ordonation.
On Wed, 2007-11-14 at 15:19 -0300, Antonio Olinto wrote:
> Hi Gavin, thanks for your message.
>
> You are right. The function nmds is from library labdsv and not from vegan. My
> mistake.
>
> Well, that's what I did:
>
> library(vegan)
> library(labdsv)
> nms.euc <- nmds(dis.euc,4)
> initial va
Hi Gavin, thanks for your message.
You are right. The function nmds is from library labdsv and not from vegan. My
mistake.
Well, that's what I did:
library(vegan)
library(labdsv)
nms.euc <- nmds(dis.euc,4)
initial value 13.457832
iter 5 value 8.589716
iter 10 value 7.989993
iter 15 value 7
On Wed, 2007-11-14 at 11:22 -0300, Antonio Olinto wrote:
> Hi,
>
> I'm using nmds command (library vegan) to analyze some fishing data.
I doubt it - there is no nmds command. Do you mean metaMDS() ? This uses
isoMDS() from package MASS with some extra features.
>
> I'd like to plot not only poi
Hi,
I'm using nmds command (library vegan) to analyze some fishing data.
I'd like to plot not only points, but also the names of species and stations in
a specified position.
I used the command
text(nmds$points[,1], nmds $points[,2],labels=row.names(nmds
$points),pos=3,cex=0.5)
But the labels a
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