Re: [R] how to create initial configuraton for isoMDS

2016-04-27 Thread Sarah Goslee
Hi, Your matrix needs to either be symmetric or an object of class dist. Here's one way to reformat it: Note that calling it dist is a poor idea, since dist() is a base function. Also note that if the distance from 1-2 is 1 while distance from 2-1 is Inf, as in your original matrix, then you

[R] how to create initial configuraton for isoMDS

2016-04-25 Thread LiLi (Z)
Hi, I'm trying to use isoMDS to project a directed graph to 2-dim vectors, but I got an error. #here is the code to create the graph using igraph package and run isoMDS on it. library(igraph) library(MASS) g<-make_graph(c(1,2, 2,3, 2,4, 3,4, 4,5, 5,6, 3,6, 1,6, 2,5),directed=TRUE) dist<-distance