Awesome! Thanks so much for your help. I am able to get the format I was
looking for.
On Mon, Jun 24, 2013 at 2:50 PM, Adams, Jean wrote:
> When sharing data, use dput() to output the data in a way that R-Help
> readers can easily use.
>
> Give this code a try and see if it helps.
>
> Jean
>
>
When sharing data, use dput() to output the data in a way that R-Help
readers can easily use.
Give this code a try and see if it helps.
Jean
# read in the example data
mat1 <- structure(list("GENE SYMBOL" = c("ADCK2", "ADCK3", "ADCK4",
"ADCK5",
"ADRBK1", "ADRBK2", "AKT1", "AKT2", "AKT3", "ALK
Sample data is as follows (for simplicity assume mat1 and mat2 are the same
matrices). Also attached as an excel file.
I want to get the pairwise interaction fischer test results. Not just the
pvalues but also want to wrote the n00, n01, n10 and n11 in the file as:
ADCK2_mat1 ADCK3_mat2 n00 n01
Could you provide an example of mat1 and mat2 as well as an example of the
output you would like from them.
Your code is very difficult to follow as written. It will be easier for
readers of the list to interpret if you use carriage returns rather than
semi colons, for example ...
fish <- functi
**
I am using the following way to get p-values from fiser exact test.
However, I do need to print for each pair the values "n00, n01, n10, n11".
How can I print that as a table and not a matrix as below along with the
p-value? Any help will be greatly appreciated
fish <- function(y, x) {n00 = s
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