Re: [R] heatmap.2 color range

2010-01-26 Thread evgeny55
also, can you point me to some example of how to omit colors from a palette -- View this message in context: http://n4.nabble.com/heatmap-2-color-range-tp1293498p1311031.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project

Re: [R] heatmap.2 color range

2010-01-26 Thread evgeny55
thanks, I think I got the color ranges down, however, I just realized that the colors don't match the data. When I execute: grad <- ifelse(randMat > 5,yelPal,ifelse(randMat<1.5,redPal,bluPal)) the grad matrix contains the correct hex codes corresponding to the randMat data matrix but when I

Re: [R] heatmap.2 color range

2010-01-26 Thread evgeny55
as a followup, I tried using the rainbow function to create the gradients but is there a way to do a "reverse" rainbow, ie. normally if I do: pie(rep(1,6), col=rainbow(6,start=0, end=.07)) I'll get a gradient from dark red to orangish but what if I want it to go the other way thanks -- View t

Re: [R] heatmap.2 color range

2010-01-26 Thread Dieter Menne
evgeny55 wrote: > > I'm trying to create a heatmap with color ranges for different values in > my matrix. For example: > If x > 5 , use orange gradient > if x < 1.5, use red gradient > . > > Right now I have the following: > orgPal<-brewer.pal(3,"Oranges") > bluPal<-brewer.pal(3,"Blues")

[R] heatmap.2 color range

2010-01-26 Thread evgeny55
Hi, I'm trying to create a heatmap with color ranges for different values in my matrix. For example: If x > 5 , use orange gradient if x < 1.5, use red gradient . Right now I have the following: orgPal<-brewer.pal(3,"Oranges") bluPal<-brewer.pal(3,"Blues") redPal<-brewer.pal(3,"Reds") grad