Re: [R] ctc package

2009-06-11 Thread Martin Morgan
Hi Johannes -- Penner, Johannes wrote: > Dear R-helpers, > > I would like to export hierarchical clusters > > e.g. fit <- hclust(d, method="ward") in the newick format > > write(hc2Newick(fit),file='hclust.newick') > > Searching for a possibility I found this solution in the package ctc > (htt

Re: [R] ctc package

2009-06-11 Thread Penner, Johannes
Dear Allan, Thank you very much! Sometimes the forest is difficult to see when you are looking at the trees only... as we would say... With kind regards Johannes __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE d

Re: [R] ctc package

2009-06-11 Thread Allan Engelhardt
The web page recommends installing using biocLite() so that is probably what you should do, but see also help("setRepositories") which seems to allow you to pick up (a version of) the package using the normal install.packages() method if you are somehow adverse to follow the recommended practis

[R] ctc package

2009-06-11 Thread Penner, Johannes
Dear R-helpers, I would like to export hierarchical clusters e.g. fit <- hclust(d, method="ward") in the newick format write(hc2Newick(fit),file='hclust.newick') Searching for a possibility I found this solution in the package ctc (http://www.bioconductor.org/packages/bioc/html/ctc.html). Howev