Re: [R] algorithms that cluster time series data

2020-07-06 Thread Bert Gunter
And since this is about RNA expression data, you would do better posting on the Bioconductor Help site rather than here. You are more likely to find the expertise and interest you seek there. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things in

Re: [R] algorithms that cluster time series data

2020-07-06 Thread Bogdan Tanasa
Dear Sarah, thank you very much for pointing to the list of available packages and algorithms. On Mon, Jul 6, 2020 at 10:20 AM Sarah Goslee wrote: > Hi, > > Unsupervised classification (clustering) is a huge field. There's an > entire task view devoted to it, where you can see many of the large

Re: [R] algorithms that cluster time series data

2020-07-06 Thread Sarah Goslee
Hi, Unsupervised classification (clustering) is a huge field. There's an entire task view devoted to it, where you can see many of the large array of R packages that perform some sort of clustering. https://cran.r-project.org/web/views/Cluster.html Since that is an overwhelming list, you may be

[R] algorithms that cluster time series data

2020-07-06 Thread Bogdan Tanasa
Dear all, please may I ask for a suggestion regarding the algorithms to cluster the expression data in single cells (scRNA-seq) at multiple time points : we do have expression data for 30 000 genes in 10 datasets that have been collected at multiple time points, and i was wondering if you could