Basically no clue, but note that C[, 1:length(C[ ,1])] looks suspect -- you
are selecting the number of columns equal to the number of rows in C. Is
that really what you want to do?
Bert
On Tue, Dec 3, 2019, 2:36 PM Ana Marija wrote:
> Hello,
>
> I am trying to run this software:
>
> https://gi
Hello,
I am trying to run this software:
https://github.com/eleporcu/TWMR
and I have my input files in my current directory: ENSG0154803.matrix,
ENSG0154803.ld
but when I try to run it:
Rscript MR.R ENSG0154803
[1] "ENSG0154803"
Error in `[.data.frame`(C, , 1:length(C[, 1])) :
First, type
names(msub)
and then type
cn
and compare the output.
Probably, you will find a name in cn that is not among the names of msub.
To maybe make it easier to see the missing column(s), you can type
setdiff(cn, names(msub))
The expression
msub[,cn]
is intended to select columns
The the column name must be quoted in the index:
msubsub=msub[,"cn"]
Please go through a basic R tutorial or two if you want to learn to use R.
Cheers,
Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley
On Wed, May 4, 2016 at 8:05 AM, ch.elahe via R-help
wrote:
>
> Hi all,
> I know it seems simple but I am trying to copy a code and I don't know
> what is the problem with this command!
>
> msubsub=msub[,cn]
>
> the error I get is : error in '[.data.frame '(msub, ,cn) : undefined
> columns sel
Hi all,
I know it seems simple but I am trying to copy a code and I don't know what is
the problem with this command!
msubsub=msub[,cn]
the error I get is : error in '[.data.frame '(msub, ,cn) : undefined columns
selected
Thanks for any help,
Elahe
_
Jennifer,
it looks like some of the columns that you are selecting don't exist.
What is the output of str(arc) before you run the code below?
Andrew
On Thu, Apr 28, 2011 at 04:49:41PM -0700, Jennifer Wessel wrote:
> This is part of my program. I am getting an error, that I cannot figure
> ou
This is part of my program. I am getting an error, that I cannot figure out,
any help would very much appreciated, thanks.
# subset variables
arc <- arc[,c("SNAP", "code", "ncode", "var", "n_total")]
Error in `[.data.frame`(arc, , c("SNAP", "code", "ncode", :
undefined col
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