Re: [R] Unable to extract gene list from chromosome

2021-04-09 Thread pooja sinha
Hi David, That's the only file I have for analysis and I am also getting the final_1 as 0 obs. of 6 variables. My problem is that I am not getting any output. It seems like I am missing something in the* values* code but I don't know what. Just for your hint I googled and some people have suggest

Re: [R] Unable to extract gene list from chromosome

2021-04-09 Thread pooja sinha
Hi David, Sorry I forgot to attach the file. Now it's attached. Thanks, Puja On Thu, Apr 8, 2021 at 6:01 PM David Winsemius wrote: > > On 4/8/21 2:30 PM, pooja sinha wrote: > > Hi All, > > > > I am trying to extract gene list from chromosome number and position, for > > that I am using biomaR

Re: [R] Unable to extract gene list from chromosome

2021-04-08 Thread David Winsemius
On 4/8/21 3:42 PM, pooja sinha wrote: > Hi David, > > Sorry I forgot to attach the file. Now it's attached. Now when I go back and check the values of the setup variables after seeing an error on the last call, Error in .processResults(postRes, mart = mart, sep = sep, fullXmlQuery = fullXmlQ

Re: [R] Unable to extract gene list from chromosome

2021-04-08 Thread David Winsemius
On 4/8/21 2:30 PM, pooja sinha wrote: Hi All, I am trying to extract gene list from chromosome number and position, for that I am using biomaRt in R but I am getting error messages as shown below. Also below is the code I am using for extraction. library("biomaRt") listMarts() ensembl <- useM

[R] Unable to extract gene list from chromosome

2021-04-08 Thread pooja sinha
Hi All, I am trying to extract gene list from chromosome number and position, for that I am using biomaRt in R but I am getting error messages as shown below. Also below is the code I am using for extraction. library("biomaRt") listMarts() ensembl <- useMart("ensembl") datasets <- listDatasets(en