Re: [R] Rprof causing R to crash

2013-02-05 Thread c97sr
Hi Jim, > Could you be a little more explicit of what the error message is. On > my Windows system 32-bit, I get the following: Sorry - it just "stops" as per the message posted. The text is from eclipse. > Rprof() > z <- 1 > system.time(for (i in 1:1e8) z <- z + 1/i) > Error: cannot alloca

Re: [R] Rprof causing R to crash

2013-02-05 Thread Steven Riley
Hi there, Thanks for the quick feedback. There is no further info on the reason for the crash - R just stops. The for loop is there just to generate the error. I'm following a previous example that others couldn't reproduce. I need Rprof to work on a different set of functions that I haven't pos

Re: [R] Rprof causing R to crash

2013-02-04 Thread jim holtman
Could you be a little more explicit of what the error message is. On my Windows system 32-bit, I get the following: > Rprof() > z <- 1 > system.time(for (i in 1:1e8) z <- z + 1/i) Error: cannot allocate vector of size 381.5 Mb Which is probably due to trying to allocate 1e8 elements of integers

Re: [R] Rprof causing R to crash

2013-02-04 Thread c97sr
Am also having trouble with Rprof. I am using on R 2.15.2 on the Mac (Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)). The example above without profiling takes around a minute to run: > z = 1 > for (i in 1:1e8) z = z+1/i > z [1] 19.9979 With profiling: > Rprof() > z = 1 > for (i in 1:

Re: [R] Rprof causing R to crash

2012-12-14 Thread Prof Brian Ripley
On 14/12/2012 13:22, Jon Olav Skoien wrote: Uwe, I am unfortunately not able to upgrade to R 2.15.2 right now, but I have Why not? Note that is part of the R-help contract: we only offer any support for the current version of R (see the posting guide). The posting guide also asked for 'at

Re: [R] Rprof causing R to crash

2012-12-14 Thread Uwe Ligges
On 14.12.2012 14:22, Jon Olav Skoien wrote: Uwe, I am unfortunately not able to upgrade to R 2.15.2 right now, but I have seen a similar problem with several older R versions. If you want to test with a shorter script, you can try the lines below. These provoke a crash from a fresh R session o

Re: [R] Rprof causing R to crash

2012-12-14 Thread Jon Olav Skoien
Uwe, I am unfortunately not able to upgrade to R 2.15.2 right now, but I have seen a similar problem with several older R versions. If you want to test with a shorter script, you can try the lines below. These provoke a crash from a fresh R session on my machine (R 2.15.1 Windows 7): Rprof()

Re: [R] Rprof causing R to crash

2012-12-12 Thread Uwe Ligges
On 12.12.2012 00:05, Marian Talbert wrote: I'm trying to use Rprof() to identify bottlenecks and speed up a particullary slow section of code which reads in a portion of a tif file and compares each of the values to values of predictors used for model fitting. I've written up an example that a

[R] Rprof causing R to crash

2012-12-11 Thread Marian Talbert
I'm trying to use Rprof() to identify bottlenecks and speed up a particullary slow section of code which reads in a portion of a tif file and compares each of the values to values of predictors used for model fitting. I've written up an example that anyone can run. Generally temp would be a secti