Dear All,
Please, is there any package in R that has implemented ridge regression for
beta and gamma models?
If not, kindly help me to adjust my model below for the beta regression so as
to accommodate ridge
penalty. Thanks.
lbeta <- function(par,y,X){
n <-length(y)
k <- ncol(X)
beta <- par[
Hi all,
I have run a ridge regression on a data set 'final' as follows:
reg=lm.ridge(final$l~final$lag1+final$lag2+final$g+final$u,
lambda=seq(0,10,0.01))
Then I enter :
select(reg) and it returns: modified HKB estimator is 19.3409
modified L-W estimator
Frank Harrell vanderbilt.edu> writes:
>
> Unlike L1 (lasso) regression or elastic net (mixture of L1 and L2), L2 norm
> regression (ridge regression) does not select variables. Selection of
> variables would not work properly, and it's unclear why you would want to
> omit "apparently" weak vari
Unlike L1 (lasso) regression or elastic net (mixture of L1 and L2), L2 norm
regression (ridge regression) does not select variables. Selection of
variables would not work properly, and it's unclear why you would want to
omit "apparently" weak variables anyway.
Frank
maths123 wrote
> I have a .txt
Hi Michael,
The coefficients of ridge regression are given by:
\beta^* = (X'X + k I)^{-1} X' y, (1)
where k > 0 is the penalty parameter and I is the identity matrix.
The ridge estimates are related to OLS estimates \beta as follows:
\beta^* = Z \beta,
For an application of ridge regression, I need to get the covariance
matrices of the estimated regression
coefficients in addition to the coefficients for all values of the ridge
contstant, lambda.
I've studied the code in MASS:::lm.ridge, but don't see how to do this
because the code is vecto
Curious - what would be the purpose of this regression?
On Mon, Oct 4, 2010 at 4:39 PM, harez...@post.harvard.edu
wrote:
> Dear R users,
> An equivalence between linear mixed model formulation and penalized
> regression
> models (including the ridge regression and penalized regression splines)
Dear R users,
An equivalence between linear mixed model formulation and penalized
regression
models (including the ridge regression and penalized regression splines) has
proven to be very useful in many aspects. Examples include the use of the lme()
function in the library(nlme) to fit smooth
adhan.html
>
>
>
>
>
>
> *From:* Eleni Christodoulou [mailto:elenic...@gmail.com]
> *Sent:* Friday, January 08, 2010 11:18 AM
> *To:* Ravi Varadhan
> *Cc:* David Winsemius; r-help@r-project
org
Subject: Re: [R] Ridge regression
I am sorry, I just pressed the "send" button by accident before completing
my e-mail. The yest are the estimated values according to the ridge model.
Is the way that I calculate them correct? Or should I cut the
+coef(ridge.test)[1] term?
Thanks a l
lth/People/Faculty_personal_pages/Varadhan.h%0Atml>
>>
>>
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>>
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>>
>> -Original Message-
>> From: r-help-boun...@r-project.org [mailto:r-h
han.h%0Atml>
>
>
>
>
>
>
>
>
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
> On
> Behalf Of Ravi Varadhan
> Se
2009 12:25 PM
To: 'David Winsemius'; 'Eleni Christodoulou'
Cc: r-help@r-project.org
Subject: Re: [R] Ridge regression
You are right that the ans$coef and coef(ans) are different in ridge
regression, where `ans' is the object from lm.ridge. It is the coef(ans)
that yields th
mius
Sent: Wednesday, December 02, 2009 11:04 AM
To: Eleni Christodoulou
Cc: r-help@r-project.org
Subject: Re: [R] Ridge regression
On Dec 2, 2009, at 10:42 AM, Eleni Christodoulou wrote:
> Dear list,
>
> I have a couple of questions concerning ridge regression. I am using
> the
On Dec 2, 2009, at 11:04 AM, David Winsemius wrote:
On Dec 2, 2009, at 10:42 AM, Eleni Christodoulou wrote:
Dear list,
I have a couple of questions concerning ridge regression. I am
using the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus *model=lm.ridge(...)*
On Dec 2, 2009, at 10:42 AM, Eleni Christodoulou wrote:
Dear list,
I have a couple of questions concerning ridge regression. I am using
the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus *model=lm.ridge(...)*
I retrieve some coefficients and some scales for each
Dear list,
I have a couple of questions concerning ridge regression. I am using the
lm.ridge(...) function in order to fit a model to my microarray data.
Thus *model=lm.ridge(...)*
I retrieve some coefficients and some scales for each gene. First of all, I
would like to ask: the real coefficients
Thanks for the suggestion. But It will be more helpful if anybody comment on
why I'm getting different outputs for three approaches.
-
Sabyasachi Patra
PhD Scholar
Indian institute of Technology Kanpur
India.
--
View this message in context:
http://www.nabble.com/Ridge-regression--Repost--
Sabyasachi Patra wrote:
Dear all,
For an ordinary ridge regression problem, I followed three different
approaches:
1. estimate beta without any standardization
2. estimate standardized beta (standardizing X and y) and then again convert
back
3. estimate beta using lm.ridge() function
X<-mat
Dear all,
For an ordinary ridge regression problem, I followed three different
approaches:
1. estimate beta without any standardization
2. estimate standardized beta (standardizing X and y) and then again convert
back
3. estimate beta using lm.ridge() function
X<-matrix(c(1,2,9,3,2,4,7,2,3,5,
If you didn't post anonymously I would have made a suggestion. Full
names and affiliations should be given.
Frank
spime wrote:
Dear all,
I considered an ordinary ridge regression problem. I followed three
different ways:
1. estimate beta without any standardization
2. estimate standardized
Dear all,
I considered an ordinary ridge regression problem. I followed three
different ways:
1. estimate beta without any standardization
2. estimate standardized beta (standardizing X and y) and then again convert
back
3. estimate beta using lm.ridge() function
X<-matrix(c(1,2,9,3,2,4,7,2,3
Thanks to all of you that helped me with the issues of bootstrapping
and downloading packages to a local disk.
As an starter I'm in the lower side of the learning curve, but this R
software is awesome. What I like most is this kind of forums when
people share their problems and we can find solution
Thanks to all of you that helped me with the issues of bootstrapping
and downloading packages to a local disk.
As an starter I'm in the lower side of the learning curve, but this R
software is awesome. What I like most is this kind of forums when
people share their problems and we can find solution
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