Re: [R] Removing 99% similar sequence help

2015-02-04 Thread David Winsemius
On Feb 4, 2015, at 11:42 AM, Nick Jeffery wrote: > Dear R users, > > I am having trouble finding a package and function to remove DNA sequences > from a fasta file that are >99% similar and/or create an output of the > remaining "unique" sequences. I found the uniquefasta function in phytools >

[R] Removing 99% similar sequence help

2015-02-04 Thread Nick Jeffery
Dear R users, I am having trouble finding a package and function to remove DNA sequences from a fasta file that are >99% similar and/or create an output of the remaining "unique" sequences. I found the uniquefasta function in phytools but R can't find this function and also doesn't allow me to set