Re: [R] ROC curve in R

2010-07-01 Thread Frank E Harrell Jr
On 07/01/2010 01:33 PM, Changbin Du wrote: Read the ROCR package, it is very good. Just be sure you really need an ROC curve. More often than not it gets in the way of understanding. Frank On Thu, Jul 1, 2010 at 9:50 AM, ashu6886 wrote: Hi, i have a fairly large amount of genomi

Re: [R] ROC curve in R

2010-07-01 Thread Changbin Du
Read the ROCR package, it is very good. On Thu, Jul 1, 2010 at 9:50 AM, ashu6886 wrote: > > Hi, > > i have a fairly large amount of genomic data. I have created a dataframe > which has "Reference" as one column and "Variation" as another. I want to > plot a ROC curve based on these 2 columns

Re: [R] ROC curve in R

2010-07-01 Thread Tal Galili
e posting, please! > > Bert Gunter > Genentech Nonclinical Biostatistics > > > > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] > On > Behalf Of ashu6886 > Sent: Thursday, July 01, 2010 9:51 AM > To: r-help@r-

Re: [R] ROC curve in R

2010-07-01 Thread Saeed Abu Nimeh
Try the ROCR package. http://rocr.bioinf.mpi-sb.mpg.de/ROCR.pdf Saeed On Thu, Jul 1, 2010 at 9:50 AM, ashu6886 wrote: > > Hi, > > i have a fairly large amount of genomic data. I have created a dataframe > which has "Reference" as one column and "Variation" as another. I want to > plot a ROC curve

Re: [R] ROC curve in R

2010-07-01 Thread Bert Gunter
atistics -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of ashu6886 Sent: Thursday, July 01, 2010 9:51 AM To: r-help@r-project.org Subject: [R] ROC curve in R Hi, i have a fairly large amount of genomic data. I have created a dat

Re: [R] ROC curve in R

2010-07-01 Thread David Winsemius
On Jul 1, 2010, at 12:50 PM, ashu6886 wrote: Hi, i have a fairly large amount of genomic data. I have created a dataframe which has "Reference" as one column and "Variation" as another. I want to plot a ROC curve based on these 2 columns. I have serached the R manual but I could not und

[R] ROC curve in R

2010-07-01 Thread ashu6886
Hi, i have a fairly large amount of genomic data. I have created a dataframe which has "Reference" as one column and "Variation" as another. I want to plot a ROC curve based on these 2 columns. I have serached the R manual but I could not understand. Can anybody help me with the R code for plotti