Re: [R] RCytoscape setPosition error

2011-02-14 Thread Paul Shannon
Hi Fahim, There is an easily resolved omission in the sample code you sent. Please note the the 3rd line below, 'displayGraph', which does not appear in your email. This method transmits your graph from R to Cytoscape, creating a Cytoscape network. cw <- CytoscapeWindow ('smallExample'

Re: [R] RCytoscape setPosition error

2011-02-14 Thread Martin Morgan
On 02/13/2011 11:28 AM, Fahim M wrote: > Hi > Can some one please point out where i am wrong. > > I am trying to position set of nodes column-wise in cytoscape using > RCytoscape > AD > BE > CF Hi Fahim -- please ask questions about Bioconductor packages on the Bioconductor mailing li

[R] RCytoscape setPosition error

2011-02-13 Thread Fahim M
Hi Can some one please point out where i am wrong. I am trying to position set of nodes column-wise in cytoscape using RCytoscape AD BE CF --- g <- new ('graphNEL', edgemode='undirected') cw <- CytoscapeWindow ('smallExample', graph=RCytoscape::makeSimpleGraph()) layo