Re: [R] R version 4.2.1 install.packages does not work with IE proxy setting

2022-10-06 Thread PIKAL Petr
r 6, 2022 1:09 PM > To: r-help@r-project.org; PIKAL Petr > Subject: Re: [R]  R version 4.2.1 install.packages does not work with IE proxy > setting > > Petr, > You also might want to check out the bug reported here: > > https://bugs.r-project.org/show_bug.cgi?id=18379 &

Re: [R] R version 4.2.1 install.packages does not work with IE proxy setting

2022-10-06 Thread Howard, Tim G (DEC) via R-help
olution with Renviron.site file in future. Cheers Petr > -Original Message- > From: Ivan Krylov > Sent: Tuesday, October 4, 2022 5:43 PM > To: PIKAL Petr > Cc: r-help mailing list > Subject: Re: [R] R version 4.2.1 install.packages does not work with IE proxy > set

Re: [R] R version 4.2.1 install.packages does not work with IE proxy setting

2022-10-05 Thread PIKAL Petr
Thanks, the workaround works but we need try the "permanent" solution with Renviron.site file in future. Cheers Petr > -Original Message- > From: Ivan Krylov > Sent: Tuesday, October 4, 2022 5:43 PM > To: PIKAL Petr > Cc: r-help mailing list > Subj

Re: [R] R version 4.2.1 (2022-06-23), RStudio 2022.07.2 "Spotted Wakerobin" Release (e7373ef8, 2022-09-06) for macOS, macOS Monterey version 12.6. Error: SVN not found

2022-10-04 Thread Jeff Newmiller
Possibly, but the question is actually not about R, so probably not... On October 4, 2022 10:32:55 AM PDT, Rui Barradas wrote: >Hello, > >Post to R-SIG-Mac [1], the R help mailing list for Mac related questions? > >[1] https://stat.ethz.ch/mailman/listinfo/r-sig-mac > >Hope this helps, > >Rui Bar

Re: [R] R version 4.2.1 (2022-06-23), RStudio 2022.07.2 "Spotted Wakerobin" Release (e7373ef8, 2022-09-06) for macOS, macOS Monterey version 12.6. Error: SVN not found

2022-10-04 Thread Rui Barradas
Hello, Post to R-SIG-Mac [1], the R help mailing list for Mac related questions? [1] https://stat.ethz.ch/mailman/listinfo/r-sig-mac Hope this helps, Rui Barradas Às 18:18 de 04/10/2022, Jeff Newmiller escreveu: Could you point out what it is I am doing wrong? ... wrong... posting question

Re: [R] R version 4.2.1 (2022-06-23), RStudio 2022.07.2 "Spotted Wakerobin" Release (e7373ef8, 2022-09-06) for macOS, macOS Monterey version 12.6. Error: SVN not found

2022-10-04 Thread Jeff Newmiller
>Could you point out what it is I am doing wrong? ... wrong... posting questions about SVN and RStudio in a forum about R? Do read the Posting Guide before posting. There are specialty mailing lists mentioned there that _might_ be relevant, but it seems to me that you need to learn how to use S

[R] R version 4.2.1 (2022-06-23), RStudio 2022.07.2 "Spotted Wakerobin" Release (e7373ef8, 2022-09-06) for macOS, macOS Monterey version 12.6. Error: SVN not found

2022-10-04 Thread Da Silva, Maisa Monseff Rodrigues
Hello. Thank you for helping me. I am starting my Bioinformatics pathway, and came across a problem im stuck with, even after trying different things: When in RStudio, I was able to install Git, but SVN remains "not found". I tried installing SVN through HomeBrew and downloaded Xcode's Command Li

Re: [R] R version 4.2.1 install.packages does not work with IE proxy setting

2022-10-04 Thread Ivan Krylov
On Tue, 4 Oct 2022 11:01:14 + PIKAL Petr wrote: > After we installed new R version R 4.2.1 installing packages through > IE proxy setting is compromised with warning that R could not connect > to server (tested in vanilla R). R 4.1 deprecated the use of download.file(method = 'wininet'). R 4

[R] R version 4.2.1 install.packages does not work with IE proxy setting

2022-10-04 Thread PIKAL Petr
Dear all After we installed new R version R 4.2.1 installing packages through IE proxy setting is compromised with warning that R could not connect to server (tested in vanilla R). > chooseCRANmirror() Warning: failed to download mirrors file (cannot open URL 'https://cran.r-project.org/CRAN_mirr

Re: [R] R version 3.3.2, Windows 10: gstat package: Error in fitting a variogram model using 'fit.variogram' function

2017-09-24 Thread Bert Gunter
No reproducible example makes it difficult to diagnose the source of the error. Did you try using traceback() after the error? That might give you a hint. I am unfamiliar with the package and function, but check the "range" argument to make sure it's supposed to be a single value and not a vector

[R] R version 3.3.2, Windows 10: gstat package: Error in fitting a variogram model using 'fit.variogram' function

2017-09-24 Thread Rathore, Saubhagya Singh
Dear Members, I am trying to fit a variogram model using fit.variogram function from the gstat package. The figure showing my experimental variogram can be seen here: https://i.stack.imgur.com/UZXw4.png My code line for this operation is: > c2.vgm.fit<-fit.variogram(c2.vgm.exp,vgm(nugget=0,

Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair of rows from two different data-frames

2017-06-23 Thread Rathore, Saubhagya Singh
had (user:61, system: 0.01 , elapsed: 0.62). Thank you again for your generous help. Saubhagya -Original Message- From: Bert Gunter [mailto:bgunter.4...@gmail.com] Sent: Friday, June 23, 2017 3:20 PM To: Rathore, Saubhagya Singh Cc: r-help@r-project.org Subject: Re: [R] R version

Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair of rows from two different data-frames

2017-06-23 Thread Rathore, Saubhagya Singh
generous help. -Original Message- From: Rui Barradas [mailto:ruipbarra...@sapo.pt] Sent: Friday, June 23, 2017 12:03 PM To: Rathore, Saubhagya Singh ; r-help-ow...@r-project.org; r-help@r-project.org Subject: Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair

Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair of rows from two different data-frames

2017-06-23 Thread Bert Gunter
You appear to be trying to write C code in R. Don't do this. If you can trade off space for efficiency, the calculation can be easily vectorized (assuming I correctly understand what you want to do, of course). set.seed(135) ## for reproducibility D1<-data.frame(x=1:5,y=6:10,z=rnorm(5)) D2<-data.f

Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair of rows from two different data-frames

2017-06-23 Thread Rui Barradas
Hello, Another way would be n <- nrow(expand.grid(1:nrow(D1), 1:nrow(D2))) D5 <- data.frame(distance=integer(n),difference=integer(n)) D5[] <- do.call(rbind, lapply(seq_len(nrow(D1)), function(i) t(sapply(seq_len(nrow(D2)), function(j){ c(distance=sqrt(sum((D1[i,1:2]-D2[j,1:2])^2)),differen

Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair of rows from two different data-frames

2017-06-23 Thread Rui Barradas
Hello, The obvious way would be to preallocate the resulting data.frame, to expand an empty one on each iteration being a time expensive operation. n <- nrow(expand.grid(1:nrow(D1), 1:nrow(D2))) D4 <- data.frame(distance=integer(n),difference=integer(n)) k <- 0 for (i in 1:nrow(D1)){ f

Re: [R] R version 3.3.2, Windows 10: Applying a function to each possible pair of rows from two different data-frames

2017-06-23 Thread Rathore, Saubhagya Singh
For certain reason, the content was not visible in the last mail, so posting it again. Dear Members, I have two different dataframes with a different number of rows. I need to apply a set of functions to each possible combination of rows with one row coming from 1st dataframe and other from

[R] R version 3.3.2, Windows 10: How to identify the common coordinates in two different SpatialPixelDataFrame

2017-03-27 Thread Rathore, Saubhagya Singh
Hello Everyone, I am resending this message as due to some reason, the message was not posted on the list before. I have two SpatialPixelDataFrames (a and b) which have few common coordinates/locations. I need to identify these common coordinates and remove them from both the dataframes. Thou

Re: [R] R version 3.3.2, Windows 10 -- gstat.predict() function often return NaN values (GSTAT Package)

2017-02-16 Thread Rathore, Saubhagya Singh
wdata=xy2, nsim=1) # random field 2 yy<-rbind(yy1,yy2) # Plotting the field library(sp) gridded(yy) = ~x+y spplot(obj=yy[1]) ## Code ends= -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Beh

[R] R version 3.3.2, Windows 10 -- gstat.predict() function often return NaN values (GSTAT Package)

2017-02-16 Thread Rathore, Saubhagya Singh
__ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible cod

Re: [R] R version 3.2.5

2016-07-26 Thread Loris Bennett
Maria Alice Jacques writes: > Good night, > > How can I download and install R version 3.2.5 from cran mirror of > University of São Paulo, São Paulo? > > Thanks for your support. > > Maria Alice P. Jacques [snip (8 lines)] On this page https://cran.r-project.org/ you can click on 'Mirrors' a

[R] R version 3.2.5

2016-07-25 Thread Maria Alice Jacques
Good night, How can I download and install R version 3.2.5 from cran mirror of University of São Paulo, São Paulo? Thanks for your support. Maria Alice P. Jacques [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To

Re: [R] R version update

2015-07-24 Thread David Winsemius
On Jul 21, 2015, at 11:55 AM, kle...@sxmail.de wrote: > Dear Ladies and Gentlemen, > as a beginner in R, I encountered a sort of "naturally given > limits"concerning the process of amending R with packages. > I apparently own version 3.0.2 and I principally decided to use R via > the RKWard GUI

Re: [R] R version update

2015-07-24 Thread Ista Zahn
Hi Markus, Please keep the list copied. See responses in line. On Fri, Jul 24, 2015 at 1:22 PM, wrote: > Dear Ista Zahn, > > Thank you that you answered. > Kubuntu delivered some packages of R and I obviously got R version 3.0.2 by > the time (early 2015) I installed R fully on my Linux Kubunt

Re: [R] R version update

2015-07-22 Thread Ista Zahn
On Jul 21, 2015 9:30 PM, wrote: > > Dear Ladies and Gentlemen, > as a beginner in R, I encountered a sort of "naturally given limits"concerning the process of amending R with packages. > I apparently own version 3.0.2 and I principally decided to use R via > the RKWard GUI on Linux Kubuntu Trusty

[R] R version update

2015-07-21 Thread klerer
Dear Ladies and Gentlemen, as a beginner in R, I encountered a sort of "naturally given limits"concerning the process of amending R with packages. I apparently own version 3.0.2 and I principally decided to use R via the RKWard GUI on Linux Kubuntu Trusty Tahr; the R version installed on my comput

Re: [R] R version 2.14.2 installation on mac OS X Yosemite

2014-11-07 Thread peter dalgaard
On 07 Nov 2014, at 01:00 , Uwe Ligges wrote: > > > On 06.11.2014 20:20, Dalela, Deepansh wrote: >> Hi, >> >> I noticed your email on the R support page. I am currently using SPSS 21 for >> mac, and need to install a macro plug-in which requires me o install R 2.14 >> (I already have R 3.0).

Re: [R] R version 2.14.2 installation on mac OS X Yosemite

2014-11-06 Thread Uwe Ligges
On 06.11.2014 20:20, Dalela, Deepansh wrote: Hi, I noticed your email on the R support page. I am currently using SPSS 21 for mac, and need to install a macro plug-in which requires me o install R 2.14 (I already have R 3.0). When i download the R 2.14 package from the CRAN website, and try

[R] R version 2.14.2 installation on mac OS X Yosemite

2014-11-06 Thread Dalela, Deepansh
Hi, I noticed your email on the R support page. I am currently using SPSS 21 for mac, and need to install a macro plug-in which requires me o install R 2.14 (I already have R 3.0). When i download the R 2.14 package from the CRAN website, and try to install it on my Macintosh HD, it gives me an

[R] R version of MATLAB interpn?

2014-08-21 Thread Steven M. Matz
Is there an existing R function to perform n-dimensional linear interpolation, like MATLAB's interpn ( http://www.mathworks.com/help/matlab/ref/interpn.html; a Python version is here: https://github.com/scipy/scipy/issues/2246#issuecomment-17028264)? My searches didn't turn up anything. Maybe not

[R] install sann package in R R version 3.0.3

2014-05-14 Thread nourhan iyte
Dear all, I try to install the package SANN but unfortunatly received this warning Warning in install.packages : package ‘sann’ is not available (for R version 3.0.3) > do yo know how can i solve this? or if you know another helping package with example to be used for simulated annealing a

[R] R version 3.0.0

2013-01-01 Thread Peter Dalgaard
This is no secret to those who read the NEWS file of the development version regularly, as the following has been in place since December 12th: \section{\Rlogo CHANGES IN R-devel}{ \subsection{SIGNIFICANT USER-VISIBLE CHANGES}{ \itemize{ \item It is intended that this version will be

Re: [R] R version

2011-01-31 Thread Jari Soininen
2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License version 2. For more information about these matters see http://www.gnu.org/licenses/. R

Re: [R] R version

2011-01-31 Thread Uwe Ligges
with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License version 2. For more information about these matters see http://www.gnu.org/licenses/. R R version 2.12.1 Patched (2011-01-30 r54169) Copyright (C) 2011 The R Foundation for Statistical

[R] R version

2011-01-31 Thread Alaios
. For more information about these matters see http://www.gnu.org/licenses/. R R version 2.12.1 Patched (2011-01-30 r54169

Re: [R] R version 2-12.0 - running as 32 or as 64 bit?

2010-10-29 Thread Dimitri Liakhovitski
Actually, Berwin - you are right. I also did get 2 shortcuts. I just thought that one of them was old - from my previous R installations. And indeed the 4th line tells what version is running. Great! Thank you! Dimitri On Fri, Oct 29, 2010 at 5:02 PM, Berwin A Turlach wrote: > G'day Dimitri, >

Re: [R] R version 2-12.0 - running as 32 or as 64 bit?

2010-10-29 Thread Duncan Murdoch
On 29/10/2010 4:45 PM, Dimitri Liakhovitski wrote: Question: I installed R verison 2-12.0 on my Windows 7 (64 bit) PC. When I was installing it, it did not ask me anything about 32 vs. 64 bit. So, if I run R now - is it running as a 32-bit or a 64-bit? If it didn't ask you about it, then it pro

Re: [R] R version 2-12.0 - running as 32 or as 64 bit?

2010-10-29 Thread Berwin A Turlach
G'day Dimitri, On Fri, 29 Oct 2010 16:45:00 -0400 Dimitri Liakhovitski wrote: > Question: I installed R verison 2-12.0 on my Windows 7 (64 bit) PC. > When I was installing it, it did not ask me anything about 32 vs. 64 > bit. So, if I run R now - is it running as a 32-bit or a 64-bit? Well, whe

[R] R version 2-12.0 - running as 32 or as 64 bit?

2010-10-29 Thread Dimitri Liakhovitski
Question: I installed R verison 2-12.0 on my Windows 7 (64 bit) PC. When I was installing it, it did not ask me anything about 32 vs. 64 bit. So, if I run R now - is it running as a 32-bit or a 64-bit? thank you! -- Dimitri Liakhovitski Ninah Consulting www.ninah.com ___

Re: [R] R version of SAS/IntrNet

2010-05-14 Thread Carlos J. Gil Bellosta
I would recommend Rapache. I have tested it and it works great. SAS/Intrnet is just CGI with another name. Best regards, Carlos J. Gil Bellosta http://www.datanalytics.com On 05/12/2010 06:27 PM, Mark Lamias wrote: Does an R package exist that is similar to SAS/Intrnet (http://support.sas.c

Re: [R] R version of SAS/IntrNet

2010-05-13 Thread schuster
Hi, more links in the FAQ: http://cran.r-project.org/doc/FAQ/R-FAQ.html#R-Web-Interfaces On Thursday 13 May 2010 01:46:51 am Scott Czepiel wrote: > I recall hearing about -- or was I just dreaming? -- a way to compile > R as an apache module so it could stay in memory while the webserver > was

Re: [R] R version of SAS/IntrNet

2010-05-12 Thread Scott Czepiel
I recall hearing about -- or was I just dreaming? -- a way to compile R as an apache module so it could stay in memory while the webserver was running. The alternative is to simply use cgi in perl or python or whatever to gather user input, execute R in batch mode, grab the output file and parse i

[R] R version of SAS/IntrNet

2010-05-12 Thread Mark Lamias
Does an R package exist that is similar to SAS/Intrnet (http://support.sas.com/documentation/onlinedoc/intrnet/index.html) that will allow users to take parameters passed to it by a web request, produce results and return them to the web-browser in HTML format?  I tried looking through the pack

[R] R version of MATLAB symbolic toolbox (variable substitution)

2009-10-14 Thread Jennifer Young
I'm translating some MATLAB code into R and have not found a simple equivalent of the function R = subs(S,old,new). I have, for example, a matrix such as this mx<- function(){ matrix( c(0, f1, f2, s1, 0, 0, 0, s2, 0), 3,3, byrow=T) } and a matrix of data dat<-matrix(c(1

Re: [R] R version-2.9.1 for Linux

2009-06-30 Thread Mark Knecht
On Mon, Jun 29, 2009 at 11:20 PM, utkarshsinghal wrote: > Hi All, > > I am currently using R version 2.8.1 on linux cent os 4.4 (i386) and > want to upgrade to version 2.9.1. It seems to me that version-2.9.1 is > it not for my OS. > Am I right? > > > Regards > Utkarsh > Build it from source? Che

[R] R version-2.9.1 for Linux

2009-06-30 Thread R P Herrold
On Tue, 30 Jun 2009, utkarshsinghal wrote: I am currently using R version 2.8.1 on linux cent os 4.4 (i386) and want to upgrade to version 2.9.1. It seems to me that version-2.9.1 is it not for my OS. Am I right? CentOS 4.4 is quite old at this point ... The following Build Requirements for

[R] R version-2.9.1 for Linux

2009-06-30 Thread R P Herrold
On Tue, 30 Jun 2009, Marc Schwartz wrote: There is usually a bit of a delay in the Fedora/EPEL repos releasing a new version of R, but I would expect to see something soon. I have R-2.9.1 on CentOS 5, and did since the day of release announcement. I am not so sure it would build on CentOS 4

Re: [R] R version-2.9.1 for Linux

2009-06-30 Thread Marc Schwartz
On Jun 30, 2009, at 1:20 AM, utkarshsinghal wrote: Hi All, I am currently using R version 2.8.1 on linux cent os 4.4 (i386) and want to upgrade to version 2.9.1. It seems to me that version-2.9.1 is it not for my OS. Am I right? Regards Utkarsh R for CentOS (and RHEL) is available via the

[R] R version-2.9.1 for Linux

2009-06-29 Thread utkarshsinghal
Hi All, I am currently using R version 2.8.1 on linux cent os 4.4 (i386) and want to upgrade to version 2.9.1. It seems to me that version-2.9.1 is it not for my OS. Am I right? Regards Utkarsh [[alternative HTML version deleted]] __ R-hel

[R] R version update utility

2009-02-07 Thread Alexandre Aguiar
Hi, This is a resend because the attachment to the previous message was removed. Sorry. I wrote a bash script that can either perform unattended upgrades of R as a cron job or by hand in a terminal. It has run in several environments and fits my purposes but I'd like to submit it to the commun

[R] R version update utility

2009-02-04 Thread Alexandre Aguiar
Hi, O wrote a small bash script that performs unattended upgrades of R. It has fit my purposes but I'd like to submit it to the community so it can be enhanced and widely useful. There is some redundancy in code and this will be addressed soon. Almost every action is logged but the main action

Re: [R] R version requires Bioconductor 2.3 version

2009-01-10 Thread Uwe Ligges
Andreas Scherer wrote: Dear support, This is not "support", but the R-help mailing list. Please do read docuemntation on how to upgrade R and contributed packages such as those from the Bioconductor project. I am new to R. I installed R 2.8.1 under Windows, and upon starting it I get the

[R] R version requires Bioconductor 2.3 version

2009-01-10 Thread Andreas Scherer
Dear support, I am new to R. I installed R 2.8.1 under Windows, and upon starting it I get the message that it requires Bioconductor version 2.3. I thought this was kind of installed in parallel or so. Where can I upgrade it ? Best regards, Andreas -- Andreas Scherer, PhD,APM CEO Spheromics

Re: [R] R version 2.7.1 (warnings)

2008-07-20 Thread Mark Difford
Hi Jaap, Great stuff! As the old adage went, "Go well, go " Bye, Mark. Van Wyk, Jaap wrote: > > Thanks, Mark, for the response. > The problem is vith SciViews. It is not stable under the latest version of > R. > I found a solution by downloading the latest version of Tinn-R, which > commu

Re: [R] R version 2.7.1 (warnings)

2008-07-20 Thread Van Wyk, Jaap
Thanks, Mark, for the response. The problem is vith SciViews. It is not stable under the latest version of R. I found a solution by downloading the latest version of Tinn-R, which communicates with the latest version of R, and now I can carry on like normal (with both windows tiled horizontally).

Re: [R] R version 2.7.1 (warnings)

2008-07-19 Thread Mark Difford
Hi Jaap, With all those packages loading it could take some time, unless it's a known problem (?). Why don't you do a vanilla start (add switch --vanilla to startup) and do some simple core-related stuff. Then add packages one-by-one... Or: search through the source code of the packages for the

[R] R version 2.7.1 (warnings)

2008-07-19 Thread Van Wyk, Jaap
Hi I have installed the new version 2.7.1, and get the following messages. Is there some way I can "fix it" ? I use SciViews as well, so the problem may be with one of the libraries that is loaded at start-up: Start-up: Loading required package: datasets Loading required package: utils Loading

Re: [R] R version of SAS Proc Varclus

2008-02-08 Thread Frank E Harrell Jr
Mary Black wrote: > I am interested in finding an R version of SAS "Proc Varclus". SAS's Proc > Varclus implements an oblique cluster analysis based on principal components. > How can I find out if R has a package that runs the same algorithm > implemented in SAS "Proc Varclus"? > > Thank you

[R] R version of SAS Proc Varclus

2008-02-08 Thread Mary Black
I am interested in finding an R version of SAS "Proc Varclus". SAS's Proc Varclus implements an oblique cluster analysis based on principal components. How can I find out if R has a package that runs the same algorithm implemented in SAS "Proc Varclus"? Thank you, Mary Helen Black _

[R] R version of SAS Proc Varclus

2008-02-08 Thread Mary Black
I am interested in finding an R version of SAS "Proc Varclus". SAS's Proc Varclus implements an oblique cluster analysis based on principal components. How can I find out if R has a package that runs the same algorithm implemented in SAS "Proc Varclus"? Thank you, Mary Helen Black Mary Hel