Re: [R] R CMD check error: File `inconsolata.sty' not found

2025-02-08 Thread Naresh Gurbuxani
This is about LaTeX install and not about R. My problem was multiple installations of LaTeX: first using MacTex, then newer version using texlive. I had also tried to install then uninstall using MacPorts. It seems MacPorts uninstall was not clean. I had to manually delete several sym links.

Re: [R] R CMD check error: File `inconsolata.sty' not found

2025-02-05 Thread Enrico Schumann
On Sun, 02 Feb 2025, Naresh Gurbuxani writes: > R CMD check gives me below message at the > end. There does not seem to be a problem with my TeX > installation. Is it possible that R CMD check is not > looking in the correct location? How can this problem > be fixed? > > Thanks, > Naresh > > *

[R] R CMD check error: File `inconsolata.sty' not found

2025-02-02 Thread Naresh Gurbuxani
R CMD check gives me below message at the end. There does not seem to be a problem with my TeX installation. Is it possible that R CMD check is not looking in the correct location? How can this problem be fixed? Thanks, Naresh * checking PDF version of manual ... WARNING LaTeX errors when c

Re: [R] R CMD check says no visible binding for global variable

2025-01-29 Thread Jorgen Harmse via R-help
could also wrap all the code in a function and use the debugger to step through that (which may help if the error occurs in an iteration of a loop body). Regards, Jorgen Harmse. Message: 1 Date: Mon, 27 Jan 2025 22:46:21 + From: Naresh Gurbuxani To: "r-help@r-project.org" Subject:

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread Naresh Gurbuxani
e are ways to set it conditionally and save the previous value and > restore it after but this gets to be lots more work ... > > > -Original Message- > From: R-help On Behalf Of Naresh Gurbuxani > Sent: Tuesday, January 28, 2025 4:25 PM > To: Duncan Murdoch > Cc: r-hel

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread Uwe Ligges
-help On Behalf Of Naresh Gurbuxani Sent: Tuesday, January 28, 2025 4:25 PM To: Duncan Murdoch Cc: r-help@r-project.org Subject: Re: [R] R CMD check says no visible binding for global variable This solution worked. Thanks Sent from my iPhone On Jan 28, 2025, at 3:09 PM, Duncan Murdoch wrote:

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread avi.e.gross
restore it after but this gets to be lots more work ... -Original Message- From: R-help On Behalf Of Naresh Gurbuxani Sent: Tuesday, January 28, 2025 4:25 PM To: Duncan Murdoch Cc: r-help@r-project.org Subject: Re: [R] R CMD check says no visible binding for global variable This solution

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread avi.e.gross
I wrote. From: Naresh Gurbuxani Sent: Tuesday, January 28, 2025 1:56 PM To: John Sorkin Cc: avi.e.gr...@gmail.com; r-help@r-project.org Subject: Re: [R] R CMD check says no visible binding for global variable Data.frame is returned by SQL query. It does have column names.

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread Naresh Gurbuxani
o0ukef> >> ____________ >> From: R-help on behalf of >> avi.e.gr...@gmail.com >> Sent: Tuesday, January 28, 2025 12:01:25 AM >> To: 'Naresh Gurbuxani' ; r-help@r-project.org >> >> Subject: Re: [R] R CMD check says no v

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread Duncan Murdoch
_ From: R-help on behalf of avi.e.gr...@gmail.com Sent: Tuesday, January 28, 2025 12:01:25 AM To: 'Naresh Gurbuxani' ; r-help@r-project.org Subject: Re: [R] R CMD check says no visible binding for global variable Naresh, I am not sure how you are creating you

Re: [R] R CMD check says no visible binding for global variable

2025-01-28 Thread Naresh Gurbuxani
___ From: R-help on behalf of avi.e.gr...@gmail.com Sent: Tuesday, January 28, 2025 12:01:25 AM To: 'Naresh Gurbuxani' ; r-help@r-project.org Subject: Re: [R] R CMD check says no visible binding for global variable Naresh, I am not sure how you are creating your data.frame so it

Re: [R] R CMD check says no visible binding for global variable

2025-01-27 Thread Sorkin, John
> colnames(mydata) <- paste0("temp", 1:ncol(mydata)) > mydata temp1 temp2 temp3 1 1 2 3 -Original Message----- From: R-help On Behalf Of Naresh Gurbuxani Sent: Monday, January 27, 2025 5:46 PM To: r-help@r-project.org Subject: [R] R CMD check says no visible

Re: [R] R CMD check says no visible binding for global variable

2025-01-27 Thread avi.e.gross
gt; mydata temp1 temp2 temp3 1 1 2 3 -Original Message- From: R-help On Behalf Of Naresh Gurbuxani Sent: Monday, January 27, 2025 5:46 PM To: r-help@r-project.org Subject: [R] R CMD check says no visible binding for global variable I have written a function which returns a

Re: [R] R CMD check says no visible binding for global variable

2025-01-27 Thread Ben Bolker
This might be better for r-package-de...@r-project.org (since you're asking a question about package-checking). This is a common problem when using non-standard evaluation. Typically you can either use `utils::globalVariables` or set these variables to NULL near the top of your function.

[R] R CMD check says no visible binding for global variable

2025-01-27 Thread Naresh Gurbuxani
I have written a function which returns an SQL query result as a data.frame. Each column of data.frame is a variable not explicitly defined. For every column name, R CMD check says ‘no visible binding for global variable . Status: 1 NOTE Is it possible to tell R CMD check that these variables

Re: [R] R CMD check vs RStudio check

2024-05-10 Thread Ivan Krylov via R-help
В Fri, 10 May 2024 03:46:54 + "Boylan, Ross" пишет: > The devtools::check() documentation mentions it invoke > pkgbuild::build() and rcmdcheck::rcmdcheck(). Since I'm guessing my > command line build and check invoked those last 2, or at least > operated similarly, they seem less likely suspe

Re: [R] R CMD check vs RStudio check

2024-05-09 Thread Boylan, Ross via R-help
e any ideas? Deleting the directory just seems weird and so it's hard to know where to look. Thanks. Ross -Original Message- From: Ivan Krylov Sent: Friday, May 3, 2024 12:52 PM To: Boylan, Ross via R-help Cc: Boylan, Ross Subject: Re: [R] R CMD check vs RStudio check В Fri, 3 M

Re: [R] R CMD check vs RStudio check

2024-05-03 Thread Ivan Krylov via R-help
В Fri, 3 May 2024 19:45:08 + "Boylan, Ross via R-help" пишет: > & $R CMD check . > * checking for file './DESCRIPTION' ... ERROR > Required fields missing or empty: > 'Author' 'Maintainer' You're checking a source package directory. This could work, but it's much easier and more reliable

[R] R CMD check vs RStudio check

2024-05-03 Thread Boylan, Ross via R-help
I am trying to figure out why checking my package is deleting my inst/doc/ directory when I do it in RStudio. Along the way I've hit another puzzle. In RStudio the check runs and is mostly OK, aside from the deletion. But when I try with vanilla R, the check fails almost immediately: --

Re: [R] R CMD check report error not finding function

2020-03-05 Thread Bert Gunter
... but this is the wrong list for such questions. Post on r-package-devel if you need further help. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, Mar 5

Re: [R] R CMD check report error not finding function

2020-03-05 Thread Michael Dewey
Dear Ruben I do not think your export pattern matches .foo so that may be the problem. Michael On 05/03/2020 09:10, Ruben wrote: Dear R-help listers, I am creating a package for a friend using his scripts and I run into a problem when doing the check. Inside a macro created with gtools::defm

[R] R CMD check report error not finding function

2020-03-05 Thread Ruben
Dear R-help listers, I am creating a package for a friend using his scripts and I run into a problem when doing the check. Inside a macro created with gtools::defmacro(par1, expr= ... there is a call to stats::optim and the function for the optimization is called .foo(), which is listed as one o

Re: [R] R CMD check and foreach code

2014-03-27 Thread Duncan Murdoch
On 27/03/2014 12:46 PM, Jannis wrote: On 27.03.2014 15:58, Duncan Murdoch wrote: > I would use a slightly less dirty hack: call globalVariables() to > declare that i is global. > > The foreach() function is using nonstandard evaluation to make this > work, and codetools (that does the checks) do

Re: [R] R CMD check and foreach code

2014-03-27 Thread Jannis
On 27.03.2014 15:58, Duncan Murdoch wrote: I would use a slightly less dirty hack: call globalVariables() to declare that i is global. The foreach() function is using nonstandard evaluation to make this work, and codetools (that does the checks) doesn't know all the ins and outs of it. (for

Re: [R] R CMD check and foreach code

2014-03-27 Thread Duncan Murdoch
On 27/03/2014 10:29 AM, Jannis wrote: Dear R users, I have created a package and would like to check it for CRAN/R-Forge submission. I use some parallelized code with the help of foreach and doMC. R CMD check now gives me a warning even though my code is correctly programmed (at least I think

[R] R CMD check and foreach code

2014-03-27 Thread Jannis
Dear R users, I have created a package and would like to check it for CRAN/R-Forge submission. I use some parallelized code with the help of foreach and doMC. R CMD check now gives me a warning even though my code is correctly programmed (at least I think that it is). The following dummy fun

Re: [R] R CMD check Error: package MASS was built before R 3.0.0 - not true!?

2013-10-29 Thread Hennig, Christian
ege London, Department of Statistical Science Gower St., London WC1E 6BT, phone +44 207 679 1698 c.hen...@ucl.ac.uk, www.homepages.ucl.ac.uk/~ucakche From: Jeff Newmiller Sent: 29 October 2013 15:12 To: Hennig, Christian; r-help-request Mailing List Subject: Re:

Re: [R] R CMD check Error: package MASS was built before R 3.0.0 - not true!?

2013-10-29 Thread Dirk Eddelbuettel
Christian Hennig ucl.ac.uk> writes: > I just updated my R to 3.0.2 and ran > R CMD check --as-cran on the just produced new version of fpc. > > I got an error > Error: package "MASS" was built before R 3.0.0: please re-install it > > - but I actually *did* re-install MASS without error just befo

Re: [R] R CMD check Error: package MASS was built before R 3.0.0 - not true!?

2013-10-29 Thread Jeff Newmiller
Perhaps check your R_LIBS* variables? http://stat.ethz.ch/R-manual/R-devel/library/base/html/libPaths.html --- Jeff NewmillerThe . . Go Live... DCN:Basics: ##.#. ##.#.

[R] R CMD check Error: package MASS was built before R 3.0.0 - not true!?

2013-10-29 Thread Christian Hennig
Hi there, I just updated my R to 3.0.2 and ran R CMD check --as-cran on the just produced new version of fpc. I got an error Error: package "MASS" was built before R 3.0.0: please re-install it - but I actually *did* re-install MASS without error just before that and within R library(MASS) wor

Re: [R] R CMD check Note: Non-standard file found at top level

2013-09-03 Thread S Subramanian
Thank you for the replies. As Prof Brian Ripley mentioned, in my case, (I was using the latest r devel) and "R CMD build pkgname" indeed put a directory called build with a file named vignette inside it. So I tried "R CMD build --no-build-vignettes pkgname" and the problem got solved. Thanks agai

Re: [R] R CMD check Note: Non-standard file found at top level

2013-09-03 Thread Hadley Wickham
The note is telling you that you usually shouldn't have a file called build in the top level of your package. What's in the file and why is it there? Hadley On Tue, Sep 3, 2013 at 10:01 AM, S Subramanian wrote: > My R CMD check pkgname and R CMD build pkgname run without any notes or > warnings

Re: [R] R CMD check Note: Non-standard file found at top level

2013-09-03 Thread Prof Brian Ripley
On 03/09/2013 21:50, Hadley Wickham wrote: The note is telling you that you usually shouldn't have a file called build in the top level of your package. What's in the file and why is it there? Under some circumstances R CMD build puts files in a directory called 'build', and in the last couple

[R] R CMD check Note: Non-standard file found at top level

2013-09-03 Thread S Subramanian
My R CMD check pkgname and R CMD build pkgname run without any notes or warnings or errors. However when i run R CMD check --as-cran-pkgname_version.tar.gz, i get the following note: * checking top-level files ... NOTE Non-standard file found at top level: 'build' Everything else is ok. What

Re: [R] R CMD check package "mypkg-Ex.R" failed

2013-06-01 Thread Uwe Ligges
On 01.06.2013 08:26, Berend Hasselman wrote: On 01-06-2013, at 02:56, Justin wrote: I build a test package in order to publish my own package to bioconductor. I am using package.skeleton Step 1. create test package "mypkg" f <- function(x,y) x+y package.skeleton(list=c("f"), name="my

Re: [R] R CMD check package "mypkg-Ex.R" failed

2013-05-31 Thread Berend Hasselman
On 01-06-2013, at 02:56, Justin wrote: > I build a test package in order to publish my own package to bioconductor. > > I am using package.skeleton > Step 1. create test package "mypkg" > f <- function(x,y) x+y > package.skeleton(list=c("f"), name="mypkg") > > Step 2. build tar.gz file >

[R] R CMD check package "mypkg-Ex.R" failed

2013-05-31 Thread Justin
I build a test package in order to publish my own package to bioconductor. I am using package.skeleton Step 1. create test package "mypkg"   f <- function(x,y) x+y   package.skeleton(list=c("f"), name="mypkg") Step 2. build tar.gz file {mars:/local/workspace01/zhangju/R_autopackage_Elbow}../bi

Re: [R] R CMD check: Error in get("ptime", pos = "CheckExEnv") ...

2013-01-29 Thread Johannes Graumann
Prof Brian Ripley wrote: > On 30/01/2013 06:02, Johannes Graumann wrote: >> Hi, >> >> Does anyboody have insight into what this error terminating "R CMD check" >> on an in-house package may imply? > > You have re-defined cat(), so I guess you re-defined get() too. Aha! "cat" not, but one of my f

Re: [R] R CMD check: Error in get("ptime", pos = "CheckExEnv") ...

2013-01-29 Thread Prof Brian Ripley
On 30/01/2013 06:02, Johannes Graumann wrote: Hi, Does anyboody have insight into what this error terminating "R CMD check" on an in-house package may imply? You have re-defined cat(), so I guess you re-defined get() too. ### cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExE

[R] R CMD check: Error in get("ptime", pos = "CheckExEnv") ...

2013-01-29 Thread Johannes Graumann
Hi, Does anyboody have insight into what this error terminating "R CMD check" on an in-house package may imply? > ### > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n") Error in get("ptime", pos = "CheckExEnv") : unused argument(s) (pos = "CheckExEnv") Calls: cat ->

Re: [R] R CMD check and browser 2.

2012-09-20 Thread R. Michael Weylandt
On Mon, Sep 17, 2012 at 3:49 PM, Christian Hoffmann wrote: > Hi, > > The browser opens, when the command > > * checking whether package 'cwhmisc' can be installed ... OK > > is executed. > >> sessionInfo() > R version 2.15.1 (2012-06-22) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > loc

Re: [R] R CMD check and browser

2012-09-15 Thread R. Michael Weylandt
On Sat, Sep 15, 2012 at 8:56 PM, Christian Hoffmann wrote: > Hi, > > Every time I do > > system("R CMD check mypackckage" > > the process executes a help.start(). Why does this happen? > Hi Christian, I'm afraid I can't replicate this with the packages I keep local copies of and installed versio

[R] R CMD check and browser

2012-09-15 Thread Christian Hoffmann
Hi, Every time I do system("R CMD check mypackckage" the process executes a help.start(). Why does this happen? Cheers Christian -- Christian W. Hoffmann, CH - 8915 Hausen am Albis, Switzerland Rigiblickstrasse 15 b, Tel.+41-44-7640853 c-w.hoffm...@sunrise.ch, christ...@echoffmann.ch, www.ec

[R] R CMD check, c++ source linking errors

2012-05-08 Thread Zalan Szakolci
Hi there, I'm sorry if I a send it for second time, I've just subscribed for the list. I am trying to interface c++ code in R and make a package. With R CMD SHLIB the dll was created, but when I try R CMD check, I am getting 'undefined reference to..' linkage error messages. The relevant c++ sou

[R] R CMD check, interfacing c++ linking errors

2012-05-07 Thread Zalan Szakolci
Hi there, I am trying to interface c++ code in R and make a package. With R CMD SHLIB the dll was created, but when I try R CMD check, I am getting 'undefined reference to..' linkage error messages. The relevant c++ source from conf-infomap.cpp: #include "conf-infomap.h" #include "R.h" // R fu

Re: [R] R CMD check

2011-10-06 Thread Uwe Ligges
On 05.10.2011 23:56, Jeff Breiwick wrote: Richard M. Heiberger temple.edu> writes: The next thing to check is this item from doc/manual/R-exts.html Quoted strings within R-like text are handled specially... My guess is that the problem is occuring in the .Rd file, not in the .R file

Re: [R] R CMD check

2011-10-05 Thread Jeff Breiwick
Richard M. Heiberger temple.edu> writes: > > The next thing to check is this item from doc/manual/R-exts.html > > Quoted strings within R-like text are handled specially... > > My guess is that the problem is occuring in the .Rd file, not in the .R > file. > > Remove the line, or double t

Re: [R] R CMD check

2011-10-05 Thread Richard M. Heiberger
The next thing to check is this item from doc/manual/R-exts.html Quoted strings within R-like text are handled specially... My guess is that the problem is occuring in the .Rd file, not in the .R file. Remove the line, or double the "\" characters. Rich On Wed, Oct 5, 2011 at 5:37 PM, Jeff

Re: [R] R CMD check

2011-10-05 Thread Jeff Breiwick
Jeff Breiwick noaa.gov> writes: > > Dear R-Group, > > I have a function that sorts a data frame and oneo of the lines in the > function is: > > vars <- unlist(strsplit(formc, "[\\+\\-]")) > > The function works fine and the above line is always reached. However, when I > include the functi

Re: [R] R CMD check

2011-10-05 Thread Duncan Murdoch
On 05/10/2011 4:46 PM, Jeff Breiwick wrote: Dear R-Group, I have a function that sorts a data frame and oneo of the lines in the function is: vars<- unlist(strsplit(formc, "[\\+\\-]")) The function works fine and the above line is always reached. However, when I include the function in a packa

[R] R CMD check

2011-10-05 Thread Jeff Breiwick
Dear R-Group, I have a function that sorts a data frame and oneo of the lines in the function is: vars <- unlist(strsplit(formc, "[\\+\\-]")) The function works fine and the above line is always reached. However, when I include the function in a package and run "R CMD check pkgname" it gives t

Re: [R] R CMD check thinks my function is an S3 method

2011-08-03 Thread Prof Brian Ripley
On Wed, 3 Aug 2011, Peter Langfelder wrote: Hi all, in my package I have a function with name plot.cor (this function is inherited from another legacy package). According to CRAN package checks reports, the check apparently thinks plot.cor is a method for the plot generic (I hope I'm using the

[R] R CMD check thinks my function is an S3 method

2011-08-03 Thread Peter Langfelder
Hi all, in my package I have a function with name plot.cor (this function is inherited from another legacy package). According to CRAN package checks reports, the check apparently thinks plot.cor is a method for the plot generic (I hope I'm using the correct terminology). checking Rd \usage secti

Re: [R] R CMD check problem

2011-08-03 Thread Baidya Nath Mandal
Many many thanks, working now. Best, BN Mandal On Wed, Aug 3, 2011 at 10:34 PM, Duncan Murdoch wrote: > On 03/08/2011 12:47 PM, Baidya Nath Mandal wrote: > >> Dear Murdoch, >> >> After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got >> following message: >> >> * installing *sou

Re: [R] R CMD check problem

2011-08-03 Thread Baidya Nath Mandal
Dear Murdoch, After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got following message: * installing *source* package 'mypackage' ... ** libs ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.Rcheck/mypackage' The log file contained following.

Re: [R] R CMD check problem

2011-08-03 Thread Duncan Murdoch
On 03/08/2011 12:47 PM, Baidya Nath Mandal wrote: Dear Murdoch, After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got following message: * installing *source* package 'mypackage' ... ** libs ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.R

Re: [R] R CMD check problem

2011-08-02 Thread Joshua Wiley
The cygwin warning should not be fatal. Is that what made you think there's a problem with your path? Can you upload mypackage online? Two options would be Github hosts that sort of thing or you could use a tar ball and any file hosting service. I (and possibly others more skilled) would be

Re: [R] R CMD check problem

2011-08-02 Thread Duncan Murdoch
On 11-08-02 5:26 AM, Baidya Nath Mandal wrote: Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygw

[R] R CMD check problem

2011-08-02 Thread Baidya Nath Mandal
Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROG

Re: [R] R CMD check: no visible binding for global variable

2011-05-16 Thread William Dunlap
Software wdunlap tibco.com > -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of swaraj basu > Sent: Monday, May 16, 2011 11:06 AM > To: r-help@r-project.org > Subject: [R] R CMD check: no visible binding f

Re: [R] R CMD check: no visible binding for global variable

2011-05-16 Thread Rolf Turner
Follow-up to my previous message; just remembered another work-around for the ``no visible binding'' note. Wrap up your calls that involve "annotIndex" in text strings and then evaluate these strings. E.g.: xxx <- "y <- x + annotIndex" eval(parse(text=xxx)) That will fool the package

Re: [R] R CMD check: no visible binding for global variable

2011-05-16 Thread Rolf Turner
On 17/05/11 06:05, swaraj basu wrote: Dear All, I have built a package which has a data.frame "annotIndex.rda in its "data" folder. I am using this data frame within two functions in my package. Though my package works fine, yet when I do a

[R] R CMD check: no visible binding for global variable

2011-05-16 Thread swaraj basu
Dear All, I have built a package which has a data.frame "annotIndex.rda in its "data" folder. I am using this data frame within two functions in my package. Though my package works fine, yet when I do a R CMD check to my packag

Re: [R] R CMD check warning

2011-05-06 Thread Uwe Ligges
On 05.05.2011 21:20, Ray Brownrigg wrote: On 6/05/2011 6:06 a.m., swaraj basu wrote: Dear All, I am trying to build a package for a set of functions. I am able to build the package and its working fine. When I check it with R CMD check I get a following warning : no visible global function de

Re: [R] R CMD check warning

2011-05-05 Thread Martin Morgan
On 05/05/2011 11:06 AM, swaraj basu wrote: Dear All, I am trying to build a package for a set of functions. I am able to build the package and its working fine. When I check it with R CMD check I get a following warning : no visible global function def

Re: [R] R CMD check warning

2011-05-05 Thread Ray Brownrigg
On 6/05/2011 6:06 a.m., swaraj basu wrote: Dear All, I am trying to build a package for a set of functions. I am able to build the package and its working fine. When I check it with R CMD check I get a following warning : no visible global function def

[R] R CMD check warning

2011-05-05 Thread swaraj basu
Dear All, I am trying to build a package for a set of functions. I am able to build the package and its working fine. When I check it with R CMD check I get a following warning : no visible global function definition for ‘biocLite’ I have use

Re: [R] R CMD check: building indices error

2011-03-23 Thread Prof Brian Ripley
On Wed, 23 Mar 2011, Didier Leibovici wrote: Hi guys, I am updating a package because of data format in data folder. So I just change an extension of a file to .txt ... nothing more. I get this error on the R CMD check ** help *** installing help indices ** building package indices ... Error in

[R] R CMD check: building indices error

2011-03-23 Thread Didier Leibovici
Hi guys, I am updating a package because of data format in data folder. So I just change an extension of a file to .txt ... nothing more. I get this error on the R CMD check ** help *** installing help indices ** building package indices ... Error in read.table(zfile, header = TRUE, as.is = FALSE

Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) :

2010-09-03 Thread raje...@cse.iitm.ac.in
-help Sent: Thu, 02 Sep 2010 16:42:31 +0530 (IST) Subject: Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) : On 02/09/2010 6:46 AM, raje...@cse.iitm.ac.in wrote: > It is dependent on another dll but it did not give compilation errors. It > see

Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) :

2010-09-03 Thread Duncan Murdoch
42:31 +0530 (IST) Subject: Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) : On 02/09/2010 6:46 AM, raje...@cse.iitm.ac.in wrote: It is dependent on another dll but it did not give compilation errors. It seemed to link fine at that point. Why do

Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) :

2010-09-02 Thread raje...@cse.iitm.ac.in
It is dependent on another dll but it did not give compilation errors. It seemed to link fine at that point. Why does it have a problem at this stage? From: "Duncan Murdoch" To: raje...@cse.iitm.ac.in Cc: "r-help" Sent: Thursday, September 2, 2010 4:05:14 PM Subject:

Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) :

2010-09-02 Thread Duncan Murdoch
;s in the same directory or on the PATH. Duncan Murdoch From: "Duncan Murdoch" To: raje...@cse.iitm.ac.in Cc: "r-help" Sent: Thursday, September 2, 2010 4:05:14 PM Subject: Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...)

Re: [R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) :

2010-09-02 Thread Duncan Murdoch
On 02/09/2010 2:29 AM, raje...@cse.iitm.ac.in wrote: Hi, I've built my own package in windows and when I run R CMD check Package-Name I get, * install options are ' --no-html' * installing *source* package 'AceTest' ... ** libs making DLL ... g++ ...etc. installing to ... done ** R ** p

[R] R CMD check Package(Windows): Error in inDL(x, as.logical(local), as.logical(now), ...) :

2010-09-01 Thread raje...@cse.iitm.ac.in
Hi, I've built my own package in windows and when I run R CMD check Package-Name I get, * install options are ' --no-html' * installing *source* package 'AceTest' ... ** libs making DLL ... g++ ...etc. installing to ... done ** R ** preparing package for lazy loading ** help Warning: ./ma

Re: [R] R CMD check in Vista

2009-12-15 Thread Uwe Ligges
Install the Rtools as described in R Installation and Administration. Uwe Ligges Juliet Ndukum wrote: I used R CMD check in windows vista, and it gives me the message 'sh' is not recognized as an internal or external command. How do I get around this, your help would be highly appreciated.

[R] R CMD check in Vista

2009-12-15 Thread Juliet Ndukum
I used R CMD check in windows vista, and it gives me the message 'sh' is not recognized as an internal or external command. How do I get around this, your help would be highly appreciated. [[alternative HTML version deleted]] __ R-help

[R] R CMD check glitch (resolved)

2009-12-10 Thread Prof. John C Nash
Today I wanted to update one of my r-forge packages (optimx) and when I ran the usual R CMD check optimx I got all sorts of odd errors with Latex (and a very slow R CMD check). I thought I had managed to damage the Rd file, which indeed I had changed. Since I recently started using Ubuntu 9.0

Re: [R] 'R CMD check' fails with "evaluation nested too deeply: infinite recursion"

2009-11-13 Thread Uwe Ligges
[Going through some old and from what I see unanswered messages No, you cannot have a cycle in Imports / Depends / LinkingTo otherwise you will run into an "the chicken or the egg" problem: That declaration means that the other packages must be loadable on installation, for example. You can tr

[R] 'R CMD check' fails with "evaluation nested too deeply: infinite recursion"

2009-10-28 Thread Joerg van den Hoff
I get the error Error : evaluation nested too deeply: infinite recursion / options(expressions=)? during a 'R CMD check ...' on one of my packages. The reason seems to be that this package is mutually dependent on another one (i.e. the DESCRIPTION files of package A lists package B under "Depen

Re: [R] "R CMD check" does not find a mistake

2009-06-10 Thread Martin Maechler
> "MM" == Martin Maechler > on Wed, 10 Jun 2009 08:50:46 +0200 writes: > "CG" == Christophe Genolini > on Tue, 09 Jun 2009 16:17:15 +0200 writes: CG> Hi the list, I build a package. They was a mistake in CG> it, but R CMD check did not find it. Is that normal ?

Re: [R] "R CMD check" does not find a mistake

2009-06-09 Thread Martin Maechler
> "CG" == Christophe Genolini > on Tue, 09 Jun 2009 16:17:15 +0200 writes: CG> Hi the list, I build a package. They was a mistake in CG> it, but R CMD check did not find it. Is that normal ? CG> Here is what Kurt gets (which is right, I did this CG> mistake): CG>

Re: [R] "R CMD check" does not find a mistake

2009-06-09 Thread Uwe Ligges
Henrik Bengtsson wrote: "using R version 2.9.0 beta (2009-04-04 r48290)" As a start, Kurt et al. are for sure using a much more recent version (probably also the very latest patched version). and if not only then at least also R-devel. Uwe /H On Tue, Jun 9, 2009 at 7:17 AM, Christo

Re: [R] "R CMD check" does not find a mistake

2009-06-09 Thread Ingmar Visser
try issueing this before calling R CMD check export _R_CHECK_CODOC_S4_METHODS_=true hth, Ingmar On 9 Jun 2009, at 16:17, Christophe Genolini wrote: Hi the list, I build a package. They was a mistake in it, but R CMD check did not find it. Is that normal ? Here is what Kurt gets (which i

Re: [R] "R CMD check" does not find a mistake

2009-06-09 Thread Henrik Bengtsson
"using R version 2.9.0 beta (2009-04-04 r48290)" As a start, Kurt et al. are for sure using a much more recent version (probably also the very latest patched version). /H On Tue, Jun 9, 2009 at 7:17 AM, Christophe Genolini wrote: > Hi the list, > > I build a package. They was a mistake in it, bu

[R] "R CMD check" does not find a mistake

2009-06-09 Thread Christophe Genolini
Hi the list, I build a package. They was a mistake in it, but R CMD check did not find it. Is that normal ? Here is what Kurt gets (which is right, I did this mistake): --- 8< * checking for code/documentation mismatches ... WARNING S4 class codoc mismatches from documentatio

Re: [R] R CMD check detects parse error, but in which file?

2009-03-04 Thread Uwe Ligges
Matthieu Stigler wrote: Jim Lemon a écrit : Matthieu Stigler wrote: Hello I looked on the archives but did not find answer for that... Running R CMD check for a package, i get an error: Error in parse(n = -1, file = file) : unexpected symbol at 3341: } But how can I find which file is gui

Re: [R] R CMD check detects parse error, but in which file?

2009-03-04 Thread Matthieu Stigler
Jim Lemon a écrit : Matthieu Stigler wrote: Hello I looked on the archives but did not find answer for that... Running R CMD check for a package, i get an error: Error in parse(n = -1, file = file) : unexpected symbol at 3341: } But how can I find which file is guilty? What is this 3342 refe

Re: [R] R CMD check detects parse error, but in which file?

2009-03-04 Thread Jim Lemon
Matthieu Stigler wrote: Hello I looked on the archives but did not find answer for that... Running R CMD check for a package, i get an error: Error in parse(n = -1, file = file) : unexpected symbol at 3341: } But how can I find which file is guilty? What is this 3342 referring to? Finally th

Re: [R] R CMD check detects parse error, but in which file?

2009-03-04 Thread Uwe Ligges
Matthieu Stigler wrote: Hello I looked on the archives but did not find answer for that... Running R CMD check for a package, i get an error: Error in parse(n = -1, file = file) : unexpected symbol at 3341: } But how can I find which file is guilty? What is this 3342 referring to? Given

[R] R CMD check detects parse error, but in which file?

2009-03-03 Thread Matthieu Stigler
Hello I looked on the archives but did not find answer for that... Running R CMD check for a package, i get an error: Error in parse(n = -1, file = file) : unexpected symbol at 3341: } But how can I find which file is guilty? What is this 3342 referring to? Finally the solution I found is to

Re: [R] R CMD check message that I can't figure out (.onLoad failed)

2008-08-06 Thread Prof Brian Ripley
On Wed, 6 Aug 2008, Uwe Ligges wrote: stephen sefick wrote: I have been able to track and fix everything so far with R CMD check. How do I make this reproducible and I will do it. this is the message that I got: Error in fun(...) : couldn't connect to display ":0.0" Error : .onLoad failed i

Re: [R] R CMD check message that I can't figure out (.onLoad failed)

2008-08-06 Thread Uwe Ligges
stephen sefick wrote: I have been able to track and fix everything so far with R CMD check. How do I make this reproducible and I will do it. this is the message that I got: Error in fun(...) : couldn't connect to display ":0.0" Error : .onLoad failed in 'loadNamespace' for 'tcltk' The f

[R] R CMD check message that I can't figure out (.onLoad failed)

2008-08-05 Thread stephen sefick
I have been able to track and fix everything so far with R CMD check. How do I make this reproducible and I will do it. this is the message that I got: Error in fun(...) : couldn't connect to display ":0.0" Error : .onLoad failed in 'loadNamespace' for 'tcltk' -- Let's not spend our time and r

Re: [R] R CMD check Error

2008-04-22 Thread Prof Brian Ripley
On Tue, 22 Apr 2008, Johannes Graumann wrote: > Prof Brian Ripley wrote: > >> One thing I should add for the archives -- R 2.7.0 and later have >> >> oNew function showNonASCII() in package tools to aid detection >> of non-ASCII characters in .R and .Rd files. > > Is there any chance

Re: [R] R CMD check Error

2008-04-21 Thread Johannes Graumann
Prof Brian Ripley wrote: > One thing I should add for the archives -- R 2.7.0 and later have > > oNew function showNonASCII() in package tools to aid detection > of non-ASCII characters in .R and .Rd files. Is there any chance of having the output of this show up in the test log wh

Re: [R] R CMD check Error

2008-04-18 Thread Prof Brian Ripley
One thing I should add for the archives -- R 2.7.0 and later have o New function showNonASCII() in package tools to aid detection of non-ASCII characters in .R and .Rd files. On Fri, 18 Apr 2008, Prof Brian Ripley wrote: > On Fri, 18 Apr 2008, Johannes Graumann wrote: > >> Hi, >>

Re: [R] R CMD check Error

2008-04-18 Thread Johannes Graumann
On Friday 18 April 2008 16:35:12 Prof Brian Ripley wrote: > On Fri, 18 Apr 2008, Johannes Graumann wrote: > > Hi, > > > > Can anyone give me a hint on what's wrong if "R CMD check " > > gives me this error: > > > >Rd files with unknown encoding: > > .Rd > > > > I have checked that

Re: [R] R CMD check Error

2008-04-18 Thread Prof Brian Ripley
On Fri, 18 Apr 2008, Johannes Graumann wrote: > Hi, > > Can anyone give me a hint on what's wrong if "R CMD check " gives > me this error: > >Rd files with unknown encoding: > .Rd > > I have checked that file over and over and can't find any weired characters > or some such. > How

[R] R CMD check Error

2008-04-18 Thread Johannes Graumann
Hi, Can anyone give me a hint on what's wrong if "R CMD check " gives me this error: Rd files with unknown encoding: .Rd I have checked that file over and over and can't find any weired characters or some such. How can I fix this? Thanks for your time, Joh ___

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