Re: [R] Problem with memory consuming algorithm

2011-09-16 Thread jim holtman
The first thing I would do, especially before letting it run for 48 hours, is to take a small subset of the data and run it with the profiler (Rprof) enable to see where time is being spent. I would also put some print statements in the main loop to periodically output the amount of CPU and memory

[R] Problem with memory consuming algorithm

2011-09-16 Thread Simon Zehnder
Hi guyz, I have serious problems with an algorithm I let run on a supercomputer: You find the functions under the following URLs: simuFunctionCaller: http://pastebin.com/6gw2fJFb calls Function simuFunctionNBM (http://pastebin.com/QeJDUnqx) after reading a csv-file ordered like the following: