Re: [R] Please help with creating the improved image with pheatmap package

2016-10-03 Thread Jim Lemon
Hi Maryam, Your labels have been "greeked" as the font is too small to be displayed properly. If you must use PNG format, specify your image file at least twice as high. png("pheatmap.png",width=1254,height=5000) PDF would be a better choice as you can just zoom in and scroll down. Jim On Mon,

Re: [R] Please help with creating the improved image with pheatmap package

2016-10-03 Thread David Winsemius
> On Oct 3, 2016, at 4:43 AM, maryam moazam wrote: > > Hi all, > > I'm trying to show about 190 items using "pheatmap" package. I'm working > with R 3.3.1 on windows 7. I used the following code: > > pheatmap(mat_data, cellwidth=20, cluster_rows = FALSE, cluster_cols = > FALSE, fontsize=5, fon

[R] Please help with creating the improved image with pheatmap package

2016-10-03 Thread maryam moazam
Hi all, I'm trying to show about 190 items using "pheatmap" package. I'm working with R 3.3.1 on windows 7. I used the following code: pheatmap(mat_data, cellwidth=20, cluster_rows = FALSE, cluster_cols = FALSE, fontsize=5, fontsize_row=5, margins=c(5,10)) The resulted image is attached. Please