Re: [R] Pathview xml issue

Between the lack of a reproducible example and the question being about a Bioconductor package, you probably won't see much response here. Try the Bioconductor mailing list? -- Sent from my phone. Please excuse my brevity. On November 7, 2017 11:15:51 AM PST, Yin wrote: >Hi, > >I'm using GAGE

[R] Pathview xml issue

Hi, I'm using GAGE/pathview to analyze my RNA-seq and phospho-protein data. The following error occurs after this command line below: >pv.out.list <- sapply(path.ids2[1:3], function(pid) pathview( gene.data = cnts.d, pathway.id = pid, gene.idtype="SYMBOL",kegg.native = F, same.layer = T, spec