Re: [R] Package for Molecular Properties

2018-05-04 Thread Jeff Newmiller
On Thu, 3 May 2018, Bert Gunter wrote: ... In addition, you may wish to also post on the Bioconductor list for this sort of thing. ... where "this sort of thing" is the original subject matter "molecular properties" rather than the sidebar about the sos package which is probably better discu

Re: [R] Package for Molecular Properties

2018-05-04 Thread Bert Gunter
... In addition, you may wish to also post on the Bioconductor list for this sort of thing. -- Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, May 3,

Re: [R] Package for Molecular Properties

2018-05-04 Thread David Winsemius
> On May 3, 2018, at 12:58 AM, Spencer Graves > wrote: > > > library(sos) > > > (mp <- findFn('{molecular properties}')) > > > ** found 7 matches in 4 packages and opened two web pages in my default > browser with (a) the 7 matches and (b) the 4 packages. The first function was > s

[R] Package for Molecular Properties

2018-05-04 Thread bbb_aaa
Hi Spencer Thank you for your suggestion. I tried sos -- Is it actually supposed to actually list out the functions along with the packages? This is what I got: found 7 matches Downloaded 7 links in 4 packages. Ignoring template. Warning messages: 1: In file(templateFile, encoding = "utf-8

Re: [R] Package for Molecular Properties

2018-05-03 Thread Spencer Graves
library(sos) (mp <- findFn('{molecular properties}'))   ** found 7 matches in 4 packages and opened two web pages in my default browser with (a) the 7 matches and (b) the 4 packages. The first function was something for amino acids, like you suggested.  Two others returned compound and

[R] Package for Molecular Properties

2018-05-03 Thread bbb_aaa
All Is there a package or library that will, given a nucleotide sequence 1. calculate the extinction coefficient at 260 nm for (Beer-Lambert's law) 2. calculate molecular weight 3. return it's complementary sequence I was able to find several packages that can do similar calculations for an a