Re: [R] How to import ENSEMBL text data using R

2008-01-01 Thread Jean lobry
Dear Anisah, ENSEMBL data are at your hand under R: > library(seqinr) > choosebank("ensembl") > cat(banknameSocket$details, sep = "\n") ACNUC Data Base Content Ensembl Release 47 Last Updated: Dec 12, 2007 76,798,685,993 bases; 3,138,133 s

Re: [R] How to import ENSEMBL text data using R

2007-12-31 Thread Charles C. Berry
On Mon, 31 Dec 2007, Martin Morgan wrote: [substantive part of reply deleted] > > Congratulations, Charles, on the first posts of the new year! > > Martin > Martin, Thanks! It really feels good to know I am 'ahead of my time'. I'd never thought of this before, but it's a great incentive to po

Re: [R] How to import ENSEMBL text data using R

2007-12-31 Thread Martin Morgan
The biomaRt package might be what you're interested in. See the Bioconductor web site http://bioconductor.org for details, in particular http://bioconductor.org/download for instructions on downloading Bioconductor packages and http://www.bioconductor.org/packages/release/Software.html for cu

Re: [R] How to import ENSEMBL text data using R

2007-12-31 Thread Charles C. Berry
On Mon, 31 Dec 2007, mohamed nur anisah wrote: > Dear all, > I have a data which is in text file and i would like to import the data > to R. From the manual, i've found the read.table command function is > the most appropriate but when i wrote the command an error had occur. > It say 'Error in

[R] How to import ENSEMBL text data using R

2007-12-31 Thread mohamed nur anisah
Dear all, I have a data which is in text file and i would like to import the data to R. From the manual, i’ve found the read.table command function is the most appropriate but when i wrote the command an error had occur. It say “Error in read.table"C:/Users/user/Documents/cfa-1.txt", header =