Re: [R] Full Documentation of R analysis

>The root directory or script > file name should be given only in one place (the R CMD BATCH >command argument) and the other file names should be derived from it. Why? I can think of lots of instances where it would be very unwise to assume that data files would be in the same directory

Re: [R] Full Documentation of R analysis

Dear all, thanks for your help which solves the problem! However, I would like to remark that I find the R CMD BATCH command options inconsistent and incomplete, since the .RData path and file name is not (always) the same as the R script and there is no easy control over the path

Re: [R] Full Documentation of R analysis

On 04/04/2013 10:18 AM, will.ea...@gmx.net wrote: Dear all, I would like to fully document an analysis in R including script, output and workspace data. To do this I currently run under Linux $ R CMD BATCH myscript.R This command combines and saves only the script commands

Re: [R] Full Documentation of R analysis

Hi Will, I think that save.image() is the way to go. Regarding the directory, its possible to pass arguments to an R script from the command line, or as long as the R script is in the directory you want the image saved in, just save it to the current working directory. Cheers, Josh On Thu, Ap

[R] Full Documentation of R analysis

Dear all, I would like to fully document an analysis in R including script, output and workspace data. To do this I currently run under Linux $ R CMD BATCH myscript.R This command combines and saves only the script commands and the output ./myscript.Rout. To save the workspace