Re: [R] Error: cannot allocate vector of size X.0 Mb

2010-09-15 Thread John1983
Thank you all for the suggestions. We do intend to get more RAM space. Meanwhile I shall have a look at the ShortRead package features. -- View this message in context: http://r.789695.n4.nabble.com/Error-cannot-allocate-vector-of-size-X-0-Mb-tp2539031p2540518.html Sent from the R help mailing

Re: [R] Error: cannot allocate vector of size X.0 Mb

2010-09-14 Thread Martin Morgan
On 09/14/2010 08:02 AM, Marc Schwartz wrote: > On Sep 14, 2010, at 9:47 AM, John1983 wrote: > >> >> Yes I see. So I typed as you mentioned and I get an 8 (therefore >> this is a 64-bit R). >> >> Is there anything else I need to check to remove this error? > > > 1. Add more RAM. > > 2. Dependi

Re: [R] Error: cannot allocate vector of size X.0 Mb

2010-09-14 Thread Marc Schwartz
On Sep 14, 2010, at 9:47 AM, John1983 wrote: > > Yes I see. > So I typed as you mentioned and I get an 8 (therefore this is a 64-bit R). > > Is there anything else I need to check to remove this error? 1. Add more RAM. 2. Depending upon what you are doing relative to data management/analysis

Re: [R] Error: cannot allocate vector of size X.0 Mb

2010-09-14 Thread Uwe Ligges
On 14.09.2010 16:47, John1983 wrote: Yes I see. So I typed as you mentioned and I get an 8 (therefore this is a 64-bit R). Is there anything else I need to check to remove this error? Yes: If the amount of RAM in your machine is sufficient Best, Uwe ___

Re: [R] Error: cannot allocate vector of size X.0 Mb

2010-09-14 Thread John1983
Yes I see. So I typed as you mentioned and I get an 8 (therefore this is a 64-bit R). Is there anything else I need to check to remove this error? -- View this message in context: http://r.789695.n4.nabble.com/Error-cannot-allocate-vector-of-size-X-0-Mb-tp2539031p2539078.html Sent from the R h

Re: [R] Error: cannot allocate vector of size X.0 Mb

2010-09-14 Thread Marc Schwartz
On Sep 14, 2010, at 9:09 AM, John1983 wrote: > > Hi, > > I am working with a file (900MB in size) that has around 10 million records > (in particular FASTQ records). > I am able to read in the file as an object of BStringSet. When I start to > manipulate the data, after almost 4 hours, I get the

[R] Error: cannot allocate vector of size X.0 Mb

2010-09-14 Thread John1983
Hi, I am working with a file (900MB in size) that has around 10 million records (in particular FASTQ records). I am able to read in the file as an object of BStringSet. When I start to manipulate the data, after almost 4 hours, I get the error message as Error: cannot allocate vector of size X.0