Re: [R] EdgeR annotation

2013-08-25 Thread Martin Morgan
On 08/24/2013 04:50 AM, Robin Mjelle wrote: after updating R and edgeR I lost the annotations in the final Diff.Expressed matrix (toptags) when running the edgeR pipeline. How do I get the row.names from the data matrix into the topTag-matrix? data <- read.table("KO_and_WT_Summary_miRNA_Expressi

[R] EdgeR annotation

2013-08-24 Thread Robin Mjelle
after updating R and edgeR I lost the annotations in the final Diff.Expressed matrix (toptags) when running the edgeR pipeline. How do I get the row.names from the data matrix into the topTag-matrix? data <- read.table("KO_and_WT_Summary_miRNA_Expression.csv", row.names=1, sep="", header=T) keep