How did you try to find the answer before posting? Some possibilities might be
go ogling [1] or perusing CRAN to find [2]...
Note that HTML tends to mangle code... please follow the Posting Guide and send
plain text email to this list.
[1] http://bfy.tw/6y3o
[2] https://cran.r-project.org/web/v
I am trying to model data with multivariate Hawkes distribution. Take the
below example. I am able to compute likelihood but don't know how to
maximize it.
library(hawkes)
lambda0 <- c(0.2,0.2)
alpha <- matrix(c(0.5,0,0,0.5),byrow=TRUE,nrow=2)
beta<- c(0.7,0.7)
history <- simulateHawkes(lamb
EBarrays
http://www.bioconductor.org/packages/release/bioc/html/EBarrays.html
Ô__
c/ /'_;kmezhoud
(*) \(*) ⴽⴰⵔⵉⵎ ⵎⴻⵣⵀⵓⴷ
http://bioinformatics.tn/
On Fri, Nov 7, 2014 at 4:23 PM, Mathias Martens
wrote:
> Hi there,I am working on a time series dataset with a lot of missing data
> (aro
Hi there,I am working on a time series dataset with a lot of missing data
(around60%).Specifically, I need to fit an ARIMA model to this data and I found
thatExpectation-Maximization (EM) algorithm using Kalman filter could
beusefull.Anyone know if already exist a package for this?Another approa
g site like MediaFire and post the link here.
> John Kane
> Kingston ON Canada
>
>
> > -Original Message-
> > From: jimmycl...@gmail.com
> > Sent: Wed, 4 Jul 2012 22:56:02 -0400
> > To: pauljoh...@gmail.com
> > Subject: Re: [R] EM algorithm to find
> To: pauljoh...@gmail.com
> Subject: Re: [R] EM algorithm to find MLE of coeff in mixed effects model
>
> Dear Paul,
>
> Thank you for your suggestion. I was moved by the fact that people are so
> nice to help learners and ask for nothing.
> With your help, I made some changes to m
Dear Paul,
Thank you for your suggestion. I was moved by the fact that people are so
nice to help learners and ask for nothing.
With your help, I made some changes to my code and add more comments, try
to make things more clear.
If this R email list allow me to upload a pdf file to illustrate the
On Tue, Jul 3, 2012 at 12:41 PM, jimmycloud wrote:
> I have a general question about coefficients estimation of the mixed model.
>
I have 2 ideas for you.
1. Fit with lme4 package, using the lmer function. That's what it is for.
2. If you really want to write your own EM algorithm, I don't feel
I have a general question about coefficients estimation of the mixed model.
I simulated a very basic model: Y|b=X*\beta+Z*b +\sigma^2* diag(ni);
b follows
N(0,\psi) #i.e. bivariate normal
where b is the latent variable, Z and X are ni*2
Dear all,
I need help with EM algorithm.
I am modeling this alogirthm based on " Incomplete Data in Generalized
Linear Models" by Joseph G Ibrahim.
i have half way through developing the R code based on this this paper, I
need little help in tweaking my code furthure.
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org]
> On Behalf Of tj
> Sent: Saturday, March 20, 2010 10:35 AM
> To: r-help@r-project.org
> Subject: Re: [R] EM algorithm in R
>
>
> here is my program... Im try
here is my program... Im trying to fit 1 component to 6 components in each of
the 300 generated samples. Each sample has size=200. For each of the 300
generated samples and for each modeled component (v=1,2,3,4,5,6), I will get
estimates of the parameters that will maximize the likelihood, AND the
tj wrote:
>
> Thanks David. I already tried two different programs for this. The first
> one has errors.
> I'm working right now on my alternative program ( i hope it will work),
> BUT I still prefer to use the first program I made because it is more
> detailed. So, I'm trying how to correct the
Thanks David. I already tried two different programs for this. The first one
has errors.
I'm working right now on my alternative program ( i hope it will work), BUT
I still prefer to use the first program I made because it is more detailed.
So, I'm trying how to correct the errors in the first R p
On Mar 20, 2010, at 3:53 AM, tj wrote:
Please help me in writing the R code for this problem. I've been
solving this
for 4 days. It was hard for me to solve it. It's a simulation
problem in R.
The problem is
My true model is a normal mixture which is given as
0.5 N(-0.8,1) + 0.5 N(0.8,
Please help me in writing the R code for this problem. I've been solving this
for 4 days. It was hard for me to solve it. It's a simulation problem in R.
The problem is
My true model is a normal mixture which is given as
0.5 N(-0.8,1) + 0.5 N(0.8,1). This model has two components.
I will get a
Gerontology
School of Medicine
Johns Hopkins University
Ph. (410) 502-2619
email: rvarad...@jhmi.edu
- Original Message -
From: Mike Lawrence
Date: Saturday, November 7, 2009 6:38 pm
Subject: [R] EM algorithm to fit circular mix of uniform+Von Mises
To: r-h...@stat.math.ethz.ch
> Hi
Hi all,
I'm curious if anyone has coded an Expectation-Maximization algorithm
that could help me model some circular data I have. I'd like to model
it as a mixture of uniform and Von Mises centered on 0, so the only
free parameters is the mixing proportion and the kappa of the Von
Mises. I couldn'
l=∑_i∑_k log[ (Se(i))^(t_ik ) [1-Se(i) ]^(1-t_ik ) p+(Sp(i))^(1-t_ik)
[1-Sp(i) ]^(t_ik ) (1-p)]
This is my observed loglikelihood. It is a sum over i (there are I tests)
and over k (K patients). t_ik is the result for the kth patient on the ith
test.
Se(i)= sensitivity, Sp (i)= specificity and
l=∑_i∑_k log[ (Se(i))^(t_ik ) [1-Se(i) ]^(1-t_ik ) p+(Sp(i))^(1-t_ik)
[1-Sp(i) ]^(t_ik ) (1-p)]
This is my observed loglikelihood. It is a sum over i (there are I tests)
and over k (K patients). t_ik is the result for the kth patient on the ith
test.
Se(i)= sensitivity, Sp (i)= specificity and
l=∑_i∑_k log [(Se(i))^(t_ik ) [1-Se(i) ]^(1-t_ik ) p+(Sp(i))^(1-t_ik )
[1-Sp(i) ]^(t_ik ) (1-p)]
This is my loglikelihood. It is a sum over i (I tests) and over k (K
patients). t_ik is the test results for the ithe test for the kth patient.
Se(i)=sensitivity of test i, Sp(i)=specificity of test
Hi,
two useful references for beginning:
www.stat.umn.edu/geyer/5931/mle/mle.pdf
www.unc.edu/~monogan/computing/r/MLE_in_R.pdf
Andrej
Elena 5/12 wrote:
Hi,
I have the following problem: I am working on assessing the accuracy of
diagnostic tests. I have a log likelihood and 3 unknown paramete
Hi,
I have the following problem: I am working on assessing the accuracy of
diagnostic tests. I have a log likelihood and 3 unknown parameters. Now I
want to apply the EM algorithm to find the maximum likelihood estimates of
these parameters. But I don't know anaything about how to code that in R
Look into the R packages for missing data by Joe Schafer. These
missing data routines use EM. See here for starters. He also wrote a
book:
http://www.stat.psu.edu/~jls/misoftwa.html
Janet
__
R-help@r-project.org mailing list
https://stat.ethz.
Dear R
expert
I am a
student and I am currently conducting a research project on the Modeling Loss
Index Triggers to price Cat Bonds: Application of the risk of hurricanes in
USA.
I need to
solve with R (especially with EM algorithm) this specific problem below. CRAN
Package archive doesn't se
Hi, i would to know, if someone have ever write the code to estimate the
parameter (mixing proportion, mean, a var/cov matrix) of a mixture of two
multivariate normal distribution. I wrote it and it works (it could find
mean and mixing proportion, if I fix the var/cov matrix), while if I fix
anythi
Hi, i would to know, if someone have ever write the code to estimate the
parameter (mixing proportion, mean, a var/cov matrix) of a mixture of two
multivariate normal distribution. I wrote it and it works (it could find
mean and mixing proportion, if I fix the var/cov matrix), while if I fix
anythi
Look up packages flexmix and mclust!
Christian
On Thu, 21 May 2009, daniele riggi wrote:
Hi,
I would like to know if it is possible to have a "R code" to estimate the
parameters of a mixture of bivariate (or multivariate) normals via EM
Algorithm. I tried to write it, but in the estimation
Hi,
I would like to know if it is possible to have a "R code" to estimate the
parameters of a mixture of bivariate (or multivariate) normals via EM
Algorithm. I tried to write it, but in the estimation of the matrix of
variance and covariance, i have some problems. I generate two bidimensional
Good morning.
I want to estimate a mixture of two Weibull distribution by using the EM
algorithm .
Does it exist an available package to do that ?
Or if not, Is it some avaible EM Algorithm ?
Thanks
Cordially
Abdoul Aziz Junior NDOYE
GREQAM Marseille.
[[alternative HT
The EM algorithm is not an algorithm for solving problems, rather an
algorithm for creating statistical methods. So you need to look for a
package to solve the specific problem you want to solve.
In some engineering literature the term is used for its application to
finite mixtures of distribu
Hi all,
Is there any EM (Expectation Maximization) package available for R?
CRAN Package archive (http://cran.r-project.org/)
doesn't seem to have it.
Regards,
Edward
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
From: "Marcin Kozak" <[EMAIL PROTECTED]>
Subject: [R] EM algorithm for multiple-locus haplotypes frequencies
> Hi all,
>
> I've been looking in R for an EM algorithm adjusted for multiple-locus
> haplotypes frequencies, but failed in 100%. Has anyone heard of
>
Hi all,
I've been looking in R for an EM algorithm adjusted for multiple-locus
haplotypes frequencies, but failed in 100%. Has anyone heard of
anything of this kind in R?
Thanks in advance,
Marcin
__
R-help@r-project.org mailing list
https://stat.ethz.
Hi,
I am trying to understand how the functions em() and me() from the
mclust package work. I cannot make sense of what the algorithm
returns. Here is a basic, simple example:
#
# two bivariate normals, centered at (-5,0) and (5,0), with Id
covarian
Dear R stat experts,
I am looking for an R function/code that can perform the EM algorithm to
estimate the parameters of a mixture of two negative binomial distributions.
I know that there are functions written that use the EM to estimate a
mixture of normal distributions and also within the pack
36 matches
Mail list logo
