;blurred" for byte compiled
functions, and as the default JIT level is high, I had
occasionallz wanted an easy way to revert the byte compilation
before debugging or another way to get rid of this
drawback..
Martin
>>
>> Best regards
>> Petr
>>
11 AM
To: PIKAL Petr ; r-help@r-project.org
Subject: Re: [R] debug only top level function
On 06/06/2019 4:55 a.m., PIKAL Petr wrote:
Dear all
I have a question about debug function. I did not use it for long time but my
vague memory tell me, that when I used debug(myfunction) in past, only
d be worth considering to add something about it
to debug help page.
Best regards
Petr
> -Original Message-
> From: Duncan Murdoch
> Sent: Thursday, June 6, 2019 11:11 AM
> To: PIKAL Petr ; r-help@r-project.org
> Subject: Re: [R] debug only top level function
>
> On 0
On 06/06/2019 4:55 a.m., PIKAL Petr wrote:
Dear all
I have a question about debug function. I did not use it for long time but my
vague memory tell me, that when I used debug(myfunction) in past, only
myfunction was debugged and browser ignored any embedded function.
example (simple)
fff <-
Dear all
I have a question about debug function. I did not use it for long time but my
vague memory tell me, that when I used debug(myfunction) in past, only
myfunction was debugged and browser ignored any embedded function.
example (simple)
fff <- function(x) mean(x, na.rm=T)
when I issue
>
Duncan,
Thanks for the help.
Since I am the only person using this machine and I couldn’t figure out where
to put the option statement aside from:
C:\Program Files\R\R-3.1.2\etc
In the file Rprofile.site
The option that I wanted was:
options(debug.font = "Consolas 12”)
Which allowed me to h
On 30/03/2015 1:50 PM, Keith S Weintraub wrote:
> Folks,
>
> I would like change some of the options for the Tk window that pops up when
> using the debug package.
>
> I know how to change the options: e.g. options(debug.font = "Courier 12
> italic”).
>
> Is there a way to “preset” these in my
Folks,
I would like change some of the options for the Tk window that pops up when
using the debug package.
I know how to change the options: e.g. options(debug.font = "Courier 12
italic”).
Is there a way to “preset” these in my environment so when debug starts up I
have all the options set u
On 11/12/2012 1:17 PM, Asis Hallab wrote:
Dear R experts,
recently I tried to debug a R function with an internal lapply call.
When debugging I seem not to be able to use the "n" command to debug the
inner function called by lapply.
How could I achieve this?
Jim gave you one solution. Another
Typically when I am debugging an 'lapply', I put a browser call inside
the lapply function that is being called and then make sure I 'source'
in the code instead of copy/paste -- the copy/paste will use any
trailing statements after the lapply call as commands to the "browser"
function.
Here is th
Dear R experts,
recently I tried to debug a R function with an internal lapply call.
When debugging I seem not to be able to use the "n" command to debug the
inner function called by lapply.
How could I achieve this?
*For example:*
test <- function( ) {
lapply( 1:3, function( x ) x + 1 )
}
debu
Hi! I'm trying to debug the cosmo R package because I'm trying to find out
where all the motifs are.
I display some of them printing the "motif" variable but I don't know how
to show all of the found motifs in one run.
http://www.bioconductor.org/packages/2.10/bioc/html/cosmo.html
I think that th
If you read my bug report, I just ran the same thing on both regular
mode and debug mode. That is why I think it is related with R base,
though there might be some other bugs related with glmulti or rJava.
Peng
On 08/10/2012 04:03 PM, peter dalgaard wrote:
> On Aug 10, 2012, at 21:23 , Zhang, P
Ok. I will stop here. I have just created a bug report.
https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15013
If anyone is interested, please see if you can reproduce it.
Thanks,
Peng
On 08/10/2012 03:04 PM, peter dalgaard wrote:
> Not to spoil your fun, but this is getting a bit off-topic
On Aug 10, 2012, at 21:23 , Zhang, Peng wrote:
> Ok. I will stop here. I have just created a bug report.
>
> https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15013
...which is exactly what you should NOT do, if the bug is likely to live in a
contributed package!!
-pd
>
> If anyone is i
Not to spoil your fun, but this is getting a bit off-topic for R-help. If you
wish to continue the debugging process in public, I think you should move to
R-devel.
Also, it sounds like the problem is in the glmulti package, so you might want
to involve its maintainer at some point.
-pd
On A
Thanks! It is interesting that Windows has pointed the problem to Java.
So it is probable that how I did my debug led me to the wrong direction.
Since I was unsure how to debug S4 class, I copied the source implement
R function from glmulti package into my testing program.
The segmentation faul
On 2012-08-10 15:42, Zhang, Peng wrote:
You are right. I am running Arch Linux. However, I obtained a
segmentation directly, so didn't know where to find the bug??
> library("glmulti")
Loading required package: rJava
> testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol
=
You are right. I am running Arch Linux. However, I obtained a
segmentation directly, so didn't know where to find the bug??
> library("glmulti")
Loading required package: rJava
> testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol
= 50)))
> glmulti(Y~(X1+X2+X3+X4+X5+X6+X7+X8
On 2012-08-10 06:10, Zhang, Peng wrote:
Thanks to both for your reply.
library(glmulti)
testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol = 50)))
glmulti(Y~(X1+X2+X3+X4+X5+X6+X7+X8+X9+X10+X11+X12+X13+X14+X15)*X16, data
= testdata, level = 2)
This is reproducible to get a seg
Thanks to both for your reply.
library(glmulti)
testdata = cbind(Y=rnorm(100), data.frame(matrix(rnorm(100*50), ncol = 50)))
glmulti(Y~(X1+X2+X3+X4+X5+X6+X7+X8+X9+X10+X11+X12+X13+X14+X15)*X16, data
= testdata, level = 2)
This is reproducible to get a segmentation fault. But I have troubles to
e
On Aug 9, 2012, at 9:14 PM, David Winsemius wrote:
>
> On Aug 9, 2012, at 4:56 PM, Zhang, Peng wrote:
>
>> Dear all,
>>
>> I had a R segmentation fault, and then invoked debug mode and ran step
>> by step.
>
>
>> 2. Why does the same function behave differently under debug and regular
>> m
On Aug 9, 2012, at 4:56 PM, Zhang, Peng wrote:
Dear all,
I had a R segmentation fault, and then invoked debug mode and ran step
by step.
When I reached "terms(Y~X1*X2*...*X16)", I would then have
"segmentation" fault. However, if I just ran this under regular "R
interactive" mode, it would be
Dear all,
I had a R segmentation fault, and then invoked debug mode and ran step
by step.
When I reached "terms(Y~X1*X2*...*X16)", I would then have
"segmentation" fault. However, if I just ran this under regular "R
interactive" mode, it would be fine though taking long time.
My questions are
On 12-02-10 12:48 PM, Justin Haynes wrote:
You can add
if(is.na(tab[i])) browser()
or
if(is.na(tab[i])) break
see inline
You can also do this temporarily. Supposing that you used
source("foo.R") to enter a function with that code in it, and you want
the check on line 10, you'd enter
se
You can add
if(is.na(tab[i])) browser()
or
if(is.na(tab[i])) break
see inline
On Fri, Feb 10, 2012 at 7:22 AM, ikuzar wrote:
> Hi,
>
> I'd like to debug in a loop (using debug() and browser() etc but not
> print()
> ). I'am looking for the first occurence of NA.
> For instance:
>
> tab = c(1
Hi,
I'd like to debug in a loop (using debug() and browser() etc but not print()
). I'am looking for the first occurence of NA.
For instance:
tab = c(1:300)
tab[250] = NA
len = length(tab)
for (i in 1:len){
if(i != len){
tab[i] = tab[i]+tab[i+1]
}
}
I do not want to do "Browse[2]> n"
I'll try,
Here is a piece of code it fails for me, the error I get is always the same,
and it happens in most of my functions. The problem is always the same
trying to execute 'mtrace'.
Thanks!
--- execution --
> mtrace(index_remap)
Error in x[[i]] : subscript out of
Hi Deivit,
Can you offer a self contained example of r code when the function fails
for you?
Contact
Details:---
Contact me: tal.gal...@gmail.com | 972-52-7275845
Read me: www.talgalili.com (Hebrew) | www.biostatistics.co.il (He
Hi all,
Since three month ago I started working with R professionally, I never did
it before, so I am such a newbie.
I am having some problems using the 'debug' package. I love this package,
but most of the times I wanna use it it just fails :P
When typing at prompt 'mtrace(myfunct)' most of the
On 11-06-03 4:49 PM, Hui Du wrote:
Hi List,
I have a question regarding debug R code. I know I can use
debug(fuction_name) and when code runs to that point, it will go to debugger. My question
is inside debugger, how to stop a code at a specified line. For example, in C (gdb or
Hi List,
I have a question regarding debug R code. I know I can use
debug(fuction_name) and when code runs to that point, it will go to debugger.
My question is inside debugger, how to stop a code at a specified line. For
example, in C (gdb or dbx debugger) I can run "stop at 123
cameron.bracken wrote:
>
> You need to look for a file (it may not be in your project directory) that
> contains "___LOCK" in its file name and delete it.
>
Specifically, the rogue lockfile should be in the same directory as
options('tikzMetricsDictionary'). Or, if you haven't set a permanent
l
Not sure if you ever figured this out, but I was just directed to this post.
You need to look for a file (it may not be in your project directory) that
contains "___LOCK" in its file name and delete it. filehash creates this to
prevent multiple writes to the same file at the same time and somehow
Hi there,
I was doing great with R, ggplot and tikzDevice, when suddenly it stopped
working.
I can do a plot just fine on the R online graphics device. I can also open a
tikzdevice via tikz(). However, the plot (both ggplot and R graphics plot)
call leads to the error:
"createLockFile(lockname):
h.D.
> Statistical Data Center
> Intermountain Healthcare
> greg.s...@imail.org
> 801.408.8111
>
>
>
>
>
> > -Original Message-
> > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-
> > project.org] On Behalf Of Mike Harwood
> > Se
f Of Mike Harwood
> Sent: Monday, January 10, 2011 6:29 AM
> To: r-help@r-project.org
> Subject: [R] debug biglm response error on bigglm model
>
> G'morning
>
> What does the error message "Error in x %*% coef(object) : non-
> conformable arguments" indicate when
G'morning
What does the error message "Error in x %*% coef(object) : non-
conformable arguments" indicate when calculating the response values
for
newdata with a model from bigglm (in package biglm), and how can I
debug it? I am attempting to do Monte Carlo simulations, which may
explain the loop
> -Original Message-
> From: Rolf Turner [mailto:r.tur...@auckland.ac.nz]
> Sent: Monday, December 14, 2009 2:07 PM
> To: Brian Diggs
> Cc: r-help@r-project.org Help
> Subject: Re: [R] debug an error that incapacitates R?
>
>
> Wouldn't sink.number() gi
uncan Murdoch
Cc: r-help@r-project.org Help
Subject: Re: [R] debug an error that incapacitates R?
Hello
And thank you for the quick answer.
On 12/13/09, Duncan Murdoch wrote:
I think you need to go back to old-fashioned debugging methods.
Identify
the line the triggers the error, by using debug(
> -Original Message-
> From: Liviu Andronic [mailto:landronim...@gmail.com]
> Sent: Sunday, December 13, 2009 4:05 AM
> To: Duncan Murdoch
> Cc: r-help@r-project.org Help
> Subject: Re: [R] debug an error that incapacitates R?
>
> Hello
> And thank you for the
Hello
And thank you for the quick answer.
On 12/13/09, Duncan Murdoch wrote:
> I think you need to go back to old-fashioned debugging methods. Identify
> the line the triggers the error, by using debug() and single stepping
> through sosInit(), or by adding print() or cat() statements to it (or
On 13/12/2009 5:31 AM, Liviu Andronic wrote:
Dear all
How should I attempt debugging this error?
sosInit()
Error: invalid connection
When this happens R refuses to run anything:
2+2
Error: invalid connection
sessionInfo ()
Error in stdout() : invalid connection
Debugging it seems impossi
Dear all
How should I attempt debugging this error?
> sosInit()
Error: invalid connection
When this happens R refuses to run anything:
> 2+2
Error: invalid connection
> sessionInfo ()
Error in stdout() : invalid connection
Debugging it seems impossible.
> options(error=recover)
> sosInit()
Error
On 10/10/2009 7:00 PM, Another Oneforyou wrote:
Hi,
I'm working through "R-debug-tools.pdf" and on page 7 it describes doing:
Browse[1]> debug(sum) ## Flag sum for debugging
however, when I try this, I get:
Browse[1]> debug(sum)Error in debug(fun) : argument must be a clo
Hi,
I'm working through "R-debug-tools.pdf" and on page 7 it describes doing:
Browse[1]> debug(sum) ## Flag sum for debugging
however, when I try this, I get:
Browse[1]> debug(sum)Error in debug(fun) : argument must be a closure
Does anyone know why I get this error, and
On Oct 1, 2009, at 11:04 AM, Tammy Ma wrote:
provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
Heritage Laboratories
West Hartford, CT
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-hel
Hi Tammy,
On Oct 1, 2009, at 11:04 AM, Tammy Ma wrote:
Hi, R-Users,'
I have written a programe to process the bunch of files in one folder.
But there is a error came out;
How can I know which file returns error when being processed?
I have tested the first 1-10th files, no any problem. But the
From: metal_lical...@live.com
To: r-help@r-project.org
Subject: Debug
Date: Thu, 1 Oct 2009 15:21:42 +0300
Hi, R-Users,'
I have written a programe to process the bunch of files in one folder.
But there is a error came out;
How can I know which file returns error when being processed?
I
Hello,
In the past I have used intensively the mtrace function from the debug
package, but now with my actual version of R(2.8.1) , it is impossible
to use it anymore.
I've updated all my packages, and I don't understand how solve this
problem...
Here is an example code :
> foo<-function(){
Tammy Ma wrote:
Hi, All
I have so many files in my directory. I got the following error. At this time,
I couldn't use debug() to check error one by one because so many files getting
invloved. How can I get some idea about my error??
The usual advice: simplify the problem until it's obvio
Hi, All
I have so many files in my directory. I got the following error. At this time,
I couldn't use debug() to check error one by one because so many files getting
invloved. How can I get some idea about my error??
.
Skipping book_log-20060222T143612.txt
Skipping book_log-20060222T162
,
Eduard
-Original Message-
From: Duncan Murdoch [mailto:murd...@stats.uwo.ca]
Sent: 04 February 2009 14:04
To: Eduard Pieterse (Macquarie Securities)
Cc: r-help@r-project.org
Subject: Re: [R] Debug help
On 2/4/2009 6:28 AM, ehxpieterse wrote:
> Hi,
>
> I am getting the follow
On 2/4/2009 6:28 AM, ehxpieterse wrote:
Hi,
I am getting the following error: argument is of length zero
My code:
temp <- 0
for (j in 1 : 3) {
for (k in 1 : 12) {
temp <- temp + as.double(C[k, (q - 1) * 3 + j]) * as.double(m_ret_reb[i + k
- 1, j+1])
}
}
Why would R handle my temp variable as
Hi,
I am getting the following error: argument is of length zero
My code:
temp <- 0
for (j in 1 : 3) {
for (k in 1 : 12) {
temp <- temp + as.double(C[k, (q - 1) * 3 + j]) * as.double(m_ret_reb[i + k
- 1, j+1])
}
}
Why would R handle my temp variable as numeric(0)?
Thanks
--
View this messag
Thanks a lot...I realised where I was going wrongif I declare debug
= F then my problem is getting solved.
-Original Message-
From: jim holtman [mailto:[EMAIL PROTECTED]
Sent: Wednesday, November 12, 2008 9:12 AM
To: Agarwal, Rahul-A
Cc: r-help@r-project.org
Subject: Re: [R
What is 'debug' defined as? Include at least the assignment or
'str(debug)'. If you have not assigned anything to it, then 'debug'
is a function in the basic set of R functions and may be giving you a
message like:
> if (debug) 1
Error in if (debug) 1 : argument is not interpretable as logical
>
I am getting this error could any one tell me why?
if(debug) cat("rahul")
Error in if (debug) cat("rahul") :
argument is not interpretable as logical
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