Re: [R] Correlation analysis for an exon array

2012-03-08 Thread R. Michael Weylandt
This question seems more suited to the Bioconductor mailing list: you'll get specialized (and very good) help if you post there. Michael On Thu, Mar 8, 2012 at 6:22 AM, Ekta Jain wrote: > Dear All, > I have an exon array and did not find any differential gene expression > between two samples. I

[R] Correlation analysis for an exon array

2012-03-08 Thread Ekta Jain
Dear All, I have an exon array and did not find any differential gene expression between two samples. I was looking to perform correlation analysis on the same. Can anyone recommend any package that would do this for an affy exon array? Will SAM analysis give me correlated genes? Thanks and reg

Re: [R] Correlation analysis

2011-11-06 Thread R. Michael Weylandt
You might find useful tools if you look at Bioconductor as well. M On Nov 6, 2011, at 4:58 PM, Minh Bui wrote: > Hi everyone, > > I am new to R-project. I did search through the list for my problem but i > can't find it. I am sorry if this question has been asked. > > I would like to perfo

Re: [R] Correlation analysis

2011-11-06 Thread B77S
I would start by reading one or more of the introduction manuals available here: http://mirrors.ibiblio.org/pub/mirrors/CRAN/ wizi wrote: > > Hi everyone, > > I am new to R-project. I did search through the list for my problem but i > can't find it. I am sorry if this question has been

[R] Correlation analysis

2011-11-06 Thread Minh Bui
Hi everyone, I am new to R-project. I did search through the list for my problem but i can't find it. I am sorry if this question has been asked. I would like to perform a correlation analysis between a hiv data and gene expression. Basically, i have a file that contains: hiv_name, start_positio